Variant report

Variant	rs11197393
Chromosome Location	chr10:117423792-117423793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:117330704..117334059-chr10:117422669..117426384,3	MCF-7	breast:
2	chr10:117191105..117195463-chr10:117420913..117426714,6	MCF-7	breast:
3	chr10:117421992..117426974-chr10:117467118..117472405,7	MCF-7	breast:
4	chr10:117421922..117426738-chr10:118029983..118035874,10	MCF-7	breast:
5	chr10:117421405..117427759-chr10:118027934..118034540,13	MCF-7	breast:
6	chr10:117423127..117425169-chr10:117426970..117428635,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

rs_ID	r²[population]
rs10159493	0.94[AFR][1000 genomes]
rs10159500	1.00[AFR][1000 genomes]
rs10159871	0.94[AFR][1000 genomes]
rs10159881	1.00[AFR][1000 genomes]
rs10160074	0.94[AFR][1000 genomes]
rs11197263	1.00[YRI][hapmap]
rs11197291	1.00[YRI][hapmap]
rs11197296	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11197304	1.00[YRI][hapmap]
rs11197348	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197349	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197350	0.91[AFR][1000 genomes]
rs11197351	1.00[YRI][hapmap]
rs11197352	1.00[YRI][hapmap]
rs11197354	0.91[AFR][1000 genomes]
rs11197356	0.91[AFR][1000 genomes]
rs11197370	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197378	1.00[AFR][1000 genomes]
rs11197379	1.00[AFR][1000 genomes]
rs11197380	1.00[AFR][1000 genomes]
rs11197381	1.00[AFR][1000 genomes]
rs11197386	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11197387	1.00[AFR][1000 genomes]
rs11197388	1.00[AFR][1000 genomes]
rs11197389	1.00[AFR][1000 genomes]
rs11197390	1.00[AFR][1000 genomes]
rs11197391	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11197394	0.94[AFR][1000 genomes]
rs11197395	1.00[AFR][1000 genomes]
rs11197402	0.82[AFR][1000 genomes]
rs11197403	0.82[AFR][1000 genomes]
rs11197404	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs11197405	0.82[AFR][1000 genomes]
rs11197406	0.82[AFR][1000 genomes]
rs12240499	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12240928	0.91[AFR][1000 genomes]
rs12243983	1.00[YRI][hapmap]
rs12245110	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12245229	0.82[AFR][1000 genomes]
rs12245317	0.91[AFR][1000 genomes]
rs12245412	1.00[AFR][1000 genomes]
rs12245465	1.00[AFR][1000 genomes]
rs12246227	1.00[AFR][1000 genomes]
rs12246242	1.00[AFR][1000 genomes]
rs12246295	1.00[AFR][1000 genomes]
rs12246358	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12246470	1.00[AFR][1000 genomes]
rs12246781	0.87[YRI][hapmap]
rs12247539	1.00[YRI][hapmap]
rs12247972	0.84[AFR][1000 genomes]
rs12248813	0.87[YRI][hapmap]
rs12248834	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12249141	0.82[AFR][1000 genomes]
rs12249348	0.91[AFR][1000 genomes]
rs12252706	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs12252733	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12252772	0.82[AFR][1000 genomes]
rs12252900	0.82[AFR][1000 genomes]
rs12252981	1.00[AFR][1000 genomes]
rs12253056	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12253279	1.00[YRI][hapmap]
rs12254795	0.81[LWK][hapmap]
rs12254841	1.00[AFR][1000 genomes]
rs12255030	1.00[AFR][1000 genomes]
rs12256161	1.00[YRI][hapmap]
rs12256635	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12257164	0.80[AFR][1000 genomes]
rs12257186	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs12257254	0.91[AFR][1000 genomes]
rs12257990	0.87[YRI][hapmap]
rs12260062	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12260891	1.00[AFR][1000 genomes]
rs12260896	1.00[YRI][hapmap]
rs12260912	0.88[YRI][hapmap]
rs12261137	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12261191	1.00[AFR][1000 genomes]
rs12261328	0.97[AFR][1000 genomes]
rs12261735	0.82[AFR][1000 genomes]
rs12262956	1.00[AFR][1000 genomes]
rs12264880	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12264898	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs12265574	1.00[YRI][hapmap]
rs12265922	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267242	0.87[YRI][hapmap]
rs12267791	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267941	0.91[AFR][1000 genomes]
rs12269447	1.00[AFR][1000 genomes]
rs28773857	0.91[AFR][1000 genomes]
rs56032448	0.94[AFR][1000 genomes]
rs56158529	0.97[AFR][1000 genomes]
rs57352585	1.00[AFR][1000 genomes]
rs59118492	0.91[AFR][1000 genomes]
rs59377038	0.94[AFR][1000 genomes]
rs60031269	0.82[AFR][1000 genomes]
rs60160808	1.00[AFR][1000 genomes]
rs61707910	0.82[AFR][1000 genomes]
rs7084607	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7089047	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7089941	0.87[YRI][hapmap]
rs74158210	1.00[AFR][1000 genomes]
rs74158212	1.00[AFR][1000 genomes]
rs74158213	1.00[AFR][1000 genomes]
rs74158214	1.00[AFR][1000 genomes]
rs74158215	1.00[AFR][1000 genomes]
rs74158216	0.94[AFR][1000 genomes]
rs74158217	1.00[AFR][1000 genomes]
rs74158218	0.94[AFR][1000 genomes]
rs74158220	1.00[AFR][1000 genomes]
rs74158221	0.94[AFR][1000 genomes]
rs74158222	1.00[AFR][1000 genomes]
rs74158223	1.00[AFR][1000 genomes]
rs74158231	1.00[AFR][1000 genomes]
rs74158232	1.00[AFR][1000 genomes]
rs74158234	0.94[AFR][1000 genomes]
rs74158235	0.94[AFR][1000 genomes]
rs74158237	0.94[AFR][1000 genomes]
rs74158238	0.94[AFR][1000 genomes]
rs74158239	0.91[AFR][1000 genomes]
rs74158240	0.89[AFR][1000 genomes]
rs74158242	0.91[AFR][1000 genomes]
rs74158243	0.91[AFR][1000 genomes]
rs74158244	0.91[AFR][1000 genomes]
rs74158245	0.91[AFR][1000 genomes]
rs74158246	0.91[AFR][1000 genomes]
rs74158247	0.91[AFR][1000 genomes]
rs74158248	0.82[AFR][1000 genomes]
rs74158249	0.82[AFR][1000 genomes]
rs74158250	0.82[AFR][1000 genomes]
rs74158252	0.82[AFR][1000 genomes]
rs74158257	0.82[AFR][1000 genomes]
rs74158401	0.91[AFR][1000 genomes]
rs74161605	0.91[AFR][1000 genomes]
rs74161606	0.91[AFR][1000 genomes]
rs74161607	0.91[AFR][1000 genomes]
rs74161608	0.91[AFR][1000 genomes]
rs74161609	0.91[AFR][1000 genomes]
rs74161610	0.91[AFR][1000 genomes]
rs74161621	1.00[AFR][1000 genomes]

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117423200-117423800	Strong transcription	HSMM	muscle
2	chr10:117423200-117425800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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