Variant report

Variant	rs56701506
Chromosome Location	chr3:85168684-85168685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56707416..56709502-chr3:85166850..85168946,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1376937	0.81[AMR][1000 genomes]
rs17022413	0.81[AMR][1000 genomes]
rs17022521	0.81[AMR][1000 genomes]
rs17022531	0.81[AMR][1000 genomes]
rs17022571	0.81[AMR][1000 genomes]
rs1901545	0.81[AMR][1000 genomes]
rs2101343	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28658170	0.81[AMR][1000 genomes]
rs28706252	0.81[AMR][1000 genomes]
rs41495948	0.91[AMR][1000 genomes]
rs57628546	0.81[AMR][1000 genomes]
rs58051057	0.81[AMR][1000 genomes]
rs58222692	0.81[AMR][1000 genomes]
rs59523340	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59867516	0.81[AMR][1000 genomes]
rs59905205	0.81[AMR][1000 genomes]
rs59907126	0.81[AMR][1000 genomes]
rs60184399	0.81[AMR][1000 genomes]
rs60222151	0.81[AMR][1000 genomes]
rs60319509	0.81[AMR][1000 genomes]
rs61212713	0.91[AMR][1000 genomes]
rs6770568	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6770622	0.81[AFR][1000 genomes]
rs6783617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804299	0.81[AMR][1000 genomes]
rs6809971	0.82[AMR][1000 genomes]
rs72903365	0.81[AMR][1000 genomes]
rs72903370	0.81[AMR][1000 genomes]
rs72903381	0.81[AMR][1000 genomes]
rs72903386	0.91[AMR][1000 genomes]
rs72905240	0.91[AMR][1000 genomes]
rs72905270	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905294	0.81[AMR][1000 genomes]
rs72905295	0.81[AMR][1000 genomes]
rs72907103	0.81[AMR][1000 genomes]
rs72907149	0.81[AMR][1000 genomes]
rs72907158	0.81[AMR][1000 genomes]
rs72907161	0.81[AMR][1000 genomes]
rs72907167	0.81[AMR][1000 genomes]
rs72907169	0.81[AMR][1000 genomes]
rs72907192	0.81[AMR][1000 genomes]
rs7614097	0.81[AMR][1000 genomes]
rs7632253	0.91[AMR][1000 genomes]
rs7643603	0.81[AMR][1000 genomes]
rs7644008	0.81[AMR][1000 genomes]
rs9917693	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv590898	chr3:85158733-85243777	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv877095	chr3:85163167-85290434	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85167000-85170400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:85168400-85177600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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