Variant report

Variant	rs56770122
Chromosome Location	chr8:35739252-35739253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs55941225	1.00[AMR][1000 genomes]
rs56114419	1.00[AMR][1000 genomes]
rs56205736	0.82[AFR][1000 genomes]
rs56274851	1.00[AMR][1000 genomes]
rs56808431	1.00[AMR][1000 genomes]
rs56860408	0.85[AMR][1000 genomes]
rs57176697	1.00[AMR][1000 genomes]
rs57529054	1.00[AMR][1000 genomes]
rs57718380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58468407	0.85[AMR][1000 genomes]
rs59081997	1.00[AMR][1000 genomes]
rs59424516	1.00[AMR][1000 genomes]
rs59650242	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60045242	1.00[AMR][1000 genomes]
rs60257165	1.00[AMR][1000 genomes]
rs60455013	1.00[AMR][1000 genomes]
rs60855337	1.00[AMR][1000 genomes]
rs61067704	1.00[AMR][1000 genomes]
rs61113233	1.00[AMR][1000 genomes]
rs61397641	0.83[AMR][1000 genomes]
rs61520251	1.00[AMR][1000 genomes]
rs73576270	1.00[AMR][1000 genomes]
rs73578265	0.85[AMR][1000 genomes]
rs73578267	0.85[AMR][1000 genomes]
rs73578270	0.85[AMR][1000 genomes]
rs73578285	0.85[AMR][1000 genomes]
rs73582210	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584169	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584182	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586705	1.00[AMR][1000 genomes]
rs73586711	0.85[AMR][1000 genomes]
rs73586719	1.00[AMR][1000 genomes]
rs73673924	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35738600-35740400	Enhancers	Fetal Intestine Small	intestine
2	chr8:35739000-35740600	Enhancers	Fetal Intestine Large	intestine
3	chr8:35739200-35739600	Weak transcription	Dnd41	blood
4	chr8:35739200-35740400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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