Variant report

Variant	rs73584129
Chromosome Location	chr8:35715472-35715473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr8:35715352-35715715	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr8:35715460-35715610	HEEpiC	esophagus:	n/a	n/a
3	CTCF	chr8:35715400-35715706	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr8:35715407-35715712	GM12878	blood:	n/a	n/a
5	RAD21	chr8:35715328-35715788	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr8:35715451-35715665	LNCaP	prostate:	n/a	n/a
7	CTCF	chr8:35715460-35715610	GM12864	blood:	n/a	n/a
8	CTCF	chr8:35715420-35715570	GM12871	blood:	n/a	n/a
9	CTCF	chr8:35715460-35715610	HMF	breast:	n/a	n/a
10	CTCF	chr8:35715460-35715610	GM12878	blood:	n/a	n/a
11	CTCF	chr8:35715460-35715610	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr8:35715440-35715590	HCFaa	heart:	n/a	n/a
13	CTCF	chr8:35715460-35715610	NB4	blood:	n/a	n/a
14	CTCF	chr8:35715440-35715590	GM12875	blood:	n/a	n/a
15	RAD21	chr8:35715296-35715802	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr8:35715466-35715656	Gliobla	brain:	n/a	n/a
17	CTCF	chr8:35715460-35715610	AG04449	skin:	n/a	n/a
18	CTCF	chr8:35715460-35715610	HPAF	blood vessel:	n/a	n/a
19	CTCF	chr8:35715380-35715530	HCT-116	colon:	n/a	n/a
20	RAD21	chr8:35715369-35715768	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr8:35715400-35715550	HEK293	kidney:	n/a	n/a
22	CTCF	chr8:35715460-35715610	HMEC	breast:	n/a	n/a
23	CTCF	chr8:35715382-35715656	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr8:35715440-35715590	GM06990	blood:	n/a	n/a
25	CTCF	chr8:35715472-35715670	ProgFib	skin:	n/a	n/a
26	CTCF	chr8:35715440-35715590	NHDF-neo	bronchial:	n/a	n/a
27	MAX	chr8:35715380-35715675	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr8:35715420-35715570	SAEC	small airway:	n/a	n/a
29	RAD21	chr8:35715379-35715620	SK-N-SH_RA	brain:	n/a	n/a
30	GTF2F1	chr8:35715441-35715684	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr8:35715460-35715610	BE2_C	brain:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000253452	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs55941225	1.00[AMR][1000 genomes]
rs56114419	1.00[AMR][1000 genomes]
rs56205736	0.86[AFR][1000 genomes]
rs56274851	1.00[AMR][1000 genomes]
rs56770122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56808431	1.00[AMR][1000 genomes]
rs56860408	0.85[AMR][1000 genomes]
rs57176697	1.00[AMR][1000 genomes]
rs57529054	1.00[AMR][1000 genomes]
rs57718380	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58468407	0.85[AMR][1000 genomes]
rs59081997	1.00[AMR][1000 genomes]
rs59424516	1.00[AMR][1000 genomes]
rs59650242	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60045242	1.00[AMR][1000 genomes]
rs60257165	1.00[AMR][1000 genomes]
rs60455013	1.00[AMR][1000 genomes]
rs60855337	1.00[AMR][1000 genomes]
rs61067704	1.00[AMR][1000 genomes]
rs61113233	1.00[AMR][1000 genomes]
rs61397641	0.83[AMR][1000 genomes]
rs61520251	1.00[AMR][1000 genomes]
rs73576270	1.00[AMR][1000 genomes]
rs73578265	0.85[AMR][1000 genomes]
rs73578267	0.85[AMR][1000 genomes]
rs73578270	0.85[AMR][1000 genomes]
rs73578285	0.85[AMR][1000 genomes]
rs73582210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586705	1.00[AMR][1000 genomes]
rs73586711	0.85[AMR][1000 genomes]
rs73586719	1.00[AMR][1000 genomes]
rs73673924	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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