Variant report

Variant	rs61397641
Chromosome Location	chr8:35775435-35775436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55941225	0.83[AMR][1000 genomes]
rs56114419	0.83[AMR][1000 genomes]
rs56274851	0.83[AMR][1000 genomes]
rs56770122	0.83[AMR][1000 genomes]
rs56808431	0.83[AMR][1000 genomes]
rs57176697	0.83[AMR][1000 genomes]
rs57529054	0.83[AMR][1000 genomes]
rs57718380	0.83[AMR][1000 genomes]
rs59081997	0.83[AMR][1000 genomes]
rs59424516	0.83[AMR][1000 genomes]
rs59650242	0.83[AMR][1000 genomes]
rs60045242	0.83[AMR][1000 genomes]
rs60257165	0.83[AMR][1000 genomes]
rs60455013	0.83[AMR][1000 genomes]
rs60855337	0.83[AMR][1000 genomes]
rs61067704	0.83[AMR][1000 genomes]
rs61113233	0.83[AMR][1000 genomes]
rs61520251	0.83[AMR][1000 genomes]
rs73576270	0.83[AMR][1000 genomes]
rs73582210	0.83[AMR][1000 genomes]
rs73584129	0.83[AMR][1000 genomes]
rs73584131	0.83[AMR][1000 genomes]
rs73584169	0.83[AMR][1000 genomes]
rs73584182	0.83[AMR][1000 genomes]
rs73586705	0.83[AMR][1000 genomes]
rs73586719	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35775400-35776400	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links