Variant report

Variant	rs56842311
Chromosome Location	chr10:18524603-18524604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013100	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013101	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11812123	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241870	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242606	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243591	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243820	0.84[AFR][1000 genomes]
rs12245011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260611	0.83[AMR][1000 genomes]
rs12261529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263728	0.83[AMR][1000 genomes]
rs12265913	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266897	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656923	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61075188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069685	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090146	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
2	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
5	chr10:18520800-18525600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18523000-18549400	Weak transcription	Pancreas	Pancrea
7	chr10:18523200-18525600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:18523200-18529600	Weak transcription	Esophagus	oesophagus
9	chr10:18523200-18529600	Weak transcription	Left Ventricle	heart
10	chr10:18523200-18536000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:18523400-18525600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:18523400-18529200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18523600-18525400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:18523600-18525600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:18523600-18525600	Weak transcription	Ovary	ovary
16	chr10:18524400-18525600	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:18524400-18527200	Enhancers	Colon Smooth Muscle	Colon
18	chr10:18524600-18524800	Enhancers	Right Atrium	heart
19	chr10:18524600-18526200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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