Variant report

Variant	rs7069240
Chromosome Location	chr10:18519371-18519372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11013100	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11013102	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11812123	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242606	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243820	0.89[AFR][1000 genomes]
rs12245011	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260611	0.83[AMR][1000 genomes]
rs12261529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263728	0.83[AMR][1000 genomes]
rs12265913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266897	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28656923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56842311	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61075188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069685	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7090146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
4	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
6	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:18515400-18522000	Weak transcription	Ovary	ovary
8	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
10	chr10:18517600-18520000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:18517800-18519800	Enhancers	HSMMtube	muscle
12	chr10:18518000-18521000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:18518000-18521000	Enhancers	Osteobl	bone
14	chr10:18518200-18520000	Enhancers	NH-A	brain
15	chr10:18518200-18520800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:18518200-18520800	Enhancers	NHDF-Ad	bronchial
17	chr10:18518400-18520800	Enhancers	NHLF	lung
18	chr10:18518800-18519400	Enhancers	Fetal Heart	heart
19	chr10:18518800-18519400	Enhancers	HSMM	muscle
20	chr10:18518800-18519600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:18518800-18519600	Enhancers	Colon Smooth Muscle	Colon
22	chr10:18518800-18519600	Enhancers	Fetal Kidney	kidney
23	chr10:18518800-18519600	Enhancers	NHEK	skin
24	chr10:18519000-18519400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:18519200-18519400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:18519200-18519600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:18519200-18521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links