Variant report

Variant	rs56991168
Chromosome Location	chr6:56537363-56537364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56534855..56537779-chr6:56562012..56563518,2	MCF-7	breast:
2	chr6:56536021..56540007-chr6:56541173..56545596,4	K562	blood:
3	chr6:56528887..56533842-chr6:56534833..56537756,4	MCF-7	breast:
4	chr6:56535123..56537866-chr6:56554714..56556544,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1024196	0.81[EUR][1000 genomes]
rs11966986	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11967796	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11970410	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16888070	0.81[EUR][1000 genomes]
rs16888106	0.81[EUR][1000 genomes]
rs16888126	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2144407	0.81[EUR][1000 genomes]
rs2180148	0.81[EUR][1000 genomes]
rs2207678	0.81[EUR][1000 genomes]
rs28633631	0.81[EUR][1000 genomes]
rs4074103	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs41267673	0.81[EUR][1000 genomes]
rs41271872	0.81[EUR][1000 genomes]
rs41271876	0.81[EUR][1000 genomes]
rs41271878	0.81[EUR][1000 genomes]
rs57289287	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs57350484	0.81[EUR][1000 genomes]
rs57790896	0.81[EUR][1000 genomes]
rs58487319	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58565063	0.81[EUR][1000 genomes]
rs59772940	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6459167	0.81[EUR][1000 genomes]
rs6459168	0.81[EUR][1000 genomes]
rs6900572	0.81[EUR][1000 genomes]
rs6903815	0.81[EUR][1000 genomes]
rs6941626	0.81[EUR][1000 genomes]
rs73455797	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73746926	0.81[EUR][1000 genomes]
rs73746929	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7749100	0.81[EUR][1000 genomes]
rs7759479	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7760503	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7760515	0.81[EUR][1000 genomes]
rs7760542	0.81[EUR][1000 genomes]
rs7760701	0.81[EUR][1000 genomes]
rs7761027	0.81[EUR][1000 genomes]
rs7775134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv432888	chr6:56507489-56560764	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56505600-56537400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:56526400-56540400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:56526400-56549200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:56527000-56554400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:56529600-56553800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:56532600-56547200	Weak transcription	HepG2	liver
7	chr6:56534400-56537600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:56534400-56537600	Enhancers	Fetal Lung	lung
9	chr6:56534600-56537600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:56534600-56537600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:56535200-56539000	Enhancers	Liver	Liver
12	chr6:56535200-56555200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:56535600-56538600	Weak transcription	Osteobl	bone
14	chr6:56535600-56548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:56535600-56549200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:56536000-56537600	Enhancers	Colon Smooth Muscle	Colon
17	chr6:56536000-56537600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:56536000-56537600	Enhancers	HSMMtube	muscle
19	chr6:56536000-56537800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:56536200-56537400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:56536200-56537600	Enhancers	Fetal Heart	heart
22	chr6:56536200-56537600	Enhancers	Dnd41	blood
23	chr6:56536200-56537600	Enhancers	NHLF	lung
24	chr6:56536200-56537800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:56536200-56538000	Enhancers	Fetal Thymus	thymus
26	chr6:56536400-56537400	Enhancers	Fetal Muscle Leg	muscle
27	chr6:56536400-56537400	Enhancers	Left Ventricle	heart
28	chr6:56536400-56537400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr6:56536400-56537600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:56536400-56537600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:56536400-56537600	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:56536400-56537600	Enhancers	HUVEC	blood vessel
33	chr6:56536400-56537800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:56536400-56537800	Enhancers	Primary hematopoietic stem cells	blood
35	chr6:56536400-56538000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:56536600-56537400	Enhancers	Fetal Brain Female	brain
37	chr6:56536600-56537600	Enhancers	Fetal Stomach	stomach
38	chr6:56536800-56538000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:56536800-56539000	Enhancers	Brain Anterior Caudate	brain
40	chr6:56537000-56537600	Genic enhancers	Muscle Satellite Cultured Cells	--
41	chr6:56537000-56537600	Genic enhancers	HSMM	muscle
42	chr6:56537000-56539200	Enhancers	Fetal Intestine Large	intestine
43	chr6:56537000-56539400	Enhancers	Fetal Intestine Small	intestine
44	chr6:56537000-56539800	Enhancers	Brain Hippocampus Middle	brain
45	chr6:56537000-56542000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:56537000-56551800	Weak transcription	Esophagus	oesophagus
47	chr6:56537200-56537400	Enhancers	Adipose Nuclei	Adipose
48	chr6:56537200-56537600	Enhancers	GM12878-XiMat	blood
49	chr6:56537200-56537800	Enhancers	Brain Angular Gyrus	brain
50	chr6:56537200-56538000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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