Variant report

Variant	rs6459168
Chromosome Location	chr6:56544085-56544086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56536021..56540007-chr6:56541173..56545596,4	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1024196	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961141	0.89[ASN][1000 genomes]
rs11961342	1.00[ASN][1000 genomes]
rs11963288	0.94[EUR][1000 genomes]
rs11966986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968575	0.89[ASN][1000 genomes]
rs11970410	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13191164	1.00[ASN][1000 genomes]
rs13192478	0.89[ASN][1000 genomes]
rs13192567	0.89[ASN][1000 genomes]
rs13205013	1.00[ASN][1000 genomes]
rs13210876	0.89[ASN][1000 genomes]
rs13213878	0.89[ASN][1000 genomes]
rs13219546	0.89[ASN][1000 genomes]
rs1535609	0.94[EUR][1000 genomes]
rs1535611	0.94[EUR][1000 genomes]
rs16888070	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16888085	0.90[ASN][1000 genomes]
rs16888096	1.00[ASN][1000 genomes]
rs16888106	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888118	1.00[ASN][1000 genomes]
rs16888124	1.00[ASN][1000 genomes]
rs16888128	1.00[ASN][1000 genomes]
rs16888130	1.00[ASN][1000 genomes]
rs16888133	1.00[ASN][1000 genomes]
rs16888135	0.89[ASN][1000 genomes]
rs2144407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207678	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28633631	1.00[EUR][1000 genomes]
rs2967960	0.89[ASN][1000 genomes]
rs3002003	0.89[ASN][1000 genomes]
rs3002004	0.89[ASN][1000 genomes]
rs34138864	0.90[ASN][1000 genomes]
rs34429594	1.00[ASN][1000 genomes]
rs34724718	1.00[ASN][1000 genomes]
rs34812826	0.89[ASN][1000 genomes]
rs34824960	0.89[ASN][1000 genomes]
rs35089136	0.89[ASN][1000 genomes]
rs35206656	1.00[ASN][1000 genomes]
rs35637749	1.00[ASN][1000 genomes]
rs35687635	1.00[ASN][1000 genomes]
rs35920751	0.89[ASN][1000 genomes]
rs36068365	1.00[ASN][1000 genomes]
rs3800026	0.94[EUR][1000 genomes]
rs3924307	0.94[EUR][1000 genomes]
rs4072271	1.00[ASN][1000 genomes]
rs41267673	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41271848	0.89[EUR][1000 genomes]
rs41271850	0.89[EUR][1000 genomes]
rs41271854	0.94[EUR][1000 genomes]
rs41271856	0.94[EUR][1000 genomes]
rs41271872	1.00[EUR][1000 genomes]
rs41271876	1.00[EUR][1000 genomes]
rs41271878	1.00[EUR][1000 genomes]
rs4133076	1.00[ASN][1000 genomes]
rs4256439	0.94[EUR][1000 genomes]
rs4275049	0.89[ASN][1000 genomes]
rs4288197	0.84[EUR][1000 genomes]
rs45442999	0.94[EUR][1000 genomes]
rs45553042	0.95[EUR][1000 genomes]
rs4574644	0.89[ASN][1000 genomes]
rs4640889	0.89[ASN][1000 genomes]
rs56094263	0.89[ASN][1000 genomes]
rs56196625	1.00[ASN][1000 genomes]
rs56991168	0.81[EUR][1000 genomes]
rs57289287	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57350484	1.00[EUR][1000 genomes]
rs57392123	1.00[ASN][1000 genomes]
rs57488435	1.00[ASN][1000 genomes]
rs57790896	1.00[EUR][1000 genomes]
rs57822928	0.94[EUR][1000 genomes]
rs58487319	0.81[EUR][1000 genomes]
rs58565063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58730144	0.94[EUR][1000 genomes]
rs59073430	1.00[ASN][1000 genomes]
rs59085778	0.89[ASN][1000 genomes]
rs59162324	0.89[ASN][1000 genomes]
rs59247267	0.89[ASN][1000 genomes]
rs59772940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59864125	0.94[EUR][1000 genomes]
rs59889120	1.00[ASN][1000 genomes]
rs60360551	1.00[ASN][1000 genomes]
rs60498201	0.89[ASN][1000 genomes]
rs62621210	0.94[EUR][1000 genomes]
rs6459167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901176	1.00[ASN][1000 genomes]
rs6903517	0.85[EUR][1000 genomes]
rs6903815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916813	1.00[ASN][1000 genomes]
rs6924375	1.00[ASN][1000 genomes]
rs6926134	0.89[ASN][1000 genomes]
rs6941626	1.00[EUR][1000 genomes]
rs73455767	0.94[EUR][1000 genomes]
rs73455782	0.94[EUR][1000 genomes]
rs73455797	0.81[EUR][1000 genomes]
rs73465854	0.94[EUR][1000 genomes]
rs73746926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746929	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746930	1.00[ASN][1000 genomes]
rs73746931	1.00[ASN][1000 genomes]
rs73747832	0.89[EUR][1000 genomes]
rs73749935	0.94[EUR][1000 genomes]
rs73749942	0.94[EUR][1000 genomes]
rs73749948	0.94[EUR][1000 genomes]
rs73749949	0.94[EUR][1000 genomes]
rs7749100	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749437	1.00[ASN][1000 genomes]
rs7759479	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760503	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760515	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7760542	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760701	1.00[EUR][1000 genomes]
rs7761027	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767128	1.00[ASN][1000 genomes]
rs7769014	0.94[EUR][1000 genomes]
rs7775134	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv432888	chr6:56507489-56560764	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56526400-56549200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:56527000-56554400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:56529600-56553800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:56532600-56547200	Weak transcription	HepG2	liver
5	chr6:56535200-56555200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:56535600-56548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:56535600-56549200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:56537000-56551800	Weak transcription	Esophagus	oesophagus
9	chr6:56537200-56545200	Weak transcription	Ovary	ovary
10	chr6:56537200-56545400	Weak transcription	Gastric	stomach
11	chr6:56537200-56547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:56537200-56548000	Weak transcription	Stomach Mucosa	stomach
13	chr6:56537200-56548200	Weak transcription	Small Intestine	intestine
14	chr6:56537200-56548600	Weak transcription	Colonic Mucosa	Colon
15	chr6:56537200-56553400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:56537200-56555200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:56537400-56548400	Weak transcription	Adipose Nuclei	Adipose
18	chr6:56537600-56546400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:56537600-56547400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:56537600-56547400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:56537600-56547400	Weak transcription	Fetal Lung	lung
22	chr6:56537600-56548000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:56537600-56552600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:56537600-56553600	Weak transcription	Fetal Stomach	stomach
25	chr6:56537800-56545000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:56537800-56547200	Weak transcription	Brain Angular Gyrus	brain
27	chr6:56537800-56549400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:56538000-56545400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:56538000-56549200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:56539000-56545200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:56539000-56546200	Weak transcription	Liver	Liver
32	chr6:56539200-56548000	Weak transcription	Fetal Intestine Large	intestine
33	chr6:56540000-56548400	Weak transcription	Hela-S3	cervix
34	chr6:56540200-56547400	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:56542000-56544200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:56542200-56544200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:56542600-56544200	Enhancers	Brain Substantia Nigra	brain
38	chr6:56542800-56546200	Weak transcription	NH-A	brain
39	chr6:56542800-56548000	Weak transcription	NHEK	skin
40	chr6:56542800-56548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:56542800-56548200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:56542800-56548400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:56543000-56544200	Weak transcription	Fetal Intestine Small	intestine
44	chr6:56543000-56545400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:56543000-56545400	Weak transcription	Psoas Muscle	Psoas
46	chr6:56543000-56545600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:56543000-56546000	Weak transcription	Right Ventricle	heart
48	chr6:56543000-56547000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:56543000-56547000	Weak transcription	HSMMtube	muscle
50	chr6:56543000-56547200	Weak transcription	Osteobl	bone

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