The 2.0 version of rSNPBase

Variant report

Variant rs16888085
Chromosome Location chr6:56503214-56503215
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56417000-56516400 Weak transcription Pancreas Pancrea
2 chr6:56432800-56513600 Weak transcription Small Intestine intestine
3 chr6:56441000-56524800 Weak transcription Colonic Mucosa Colon
4 chr6:56451800-56514200 Weak transcription Primary hematopoietic stem cells blood
5 chr6:56452200-56514600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr6:56453000-56506800 Strong transcription HSMM muscle
7 chr6:56459000-56521000 Weak transcription Spleen Spleen
8 chr6:56460600-56513600 Weak transcription Stomach Mucosa stomach
9 chr6:56478400-56514600 Weak transcription Lung lung
10 chr6:56480600-56514600 Strong transcription HUES64 Cell Line embryonic stem cell
11 chr6:56480800-56536400 Weak transcription Gastric stomach
12 chr6:56482000-56518200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr6:56482200-56505000 Weak transcription Esophagus oesophagus
14 chr6:56483400-56512600 Weak transcription Psoas Muscle Psoas
15 chr6:56485000-56514400 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr6:56485600-56507400 Weak transcription Aorta Aorta
17 chr6:56485800-56512400 Weak transcription Fetal Stomach stomach
18 chr6:56488800-56507200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr6:56490000-56513600 Strong transcription Fetal Intestine Large intestine
20 chr6:56490400-56507400 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr6:56490800-56507400 Strong transcription Liver Liver
22 chr6:56491600-56536600 Weak transcription Fetal Brain Female brain
23 chr6:56496600-56517000 Weak transcription Fetal Brain Male brain
24 chr6:56496800-56515000 Weak transcription Fetal Kidney kidney
25 chr6:56497600-56506600 Weak transcription Fetal Thymus thymus
26 chr6:56497800-56524800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr6:56499400-56503600 Weak transcription Brain Cingulate Gyrus brain
28 chr6:56499400-56504800 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr6:56499400-56510000 Weak transcription Monocytes-CD14+_RO01746 blood
30 chr6:56499400-56511800 Weak transcription Ovary ovary
31 chr6:56499400-56516800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr6:56499600-56504800 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr6:56499600-56509200 Weak transcription Right Ventricle heart
34 chr6:56499600-56509400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr6:56499800-56503800 Weak transcription Primary monocytes fromperipheralblood blood
36 chr6:56499800-56505000 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr6:56500200-56504200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr6:56500200-56509400 Weak transcription Fetal Muscle Trunk muscle
39 chr6:56500600-56503800 Weak transcription Placenta Amnion Placenta Amnion
40 chr6:56500600-56504000 Weak transcription Colon Smooth Muscle Colon
41 chr6:56500600-56505000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr6:56500600-56507200 Weak transcription H9 Cell Line embryonic stem cell
43 chr6:56500600-56509400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr6:56500600-56509400 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr6:56500600-56509800 Weak transcription Brain Germinal Matrix brain
46 chr6:56500600-56514200 Weak transcription Fetal Heart heart
47 chr6:56500800-56503600 Weak transcription NH-A brain
48 chr6:56500800-56504400 Weak transcription Duodenum Mucosa Duodenum
49 chr6:56500800-56513000 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr6:56501000-56503400 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015