Variant report

Variant rs35637749
Chromosome Location chr6:56557411-56557412
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56543000-56559400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr6:56546200-56564800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr6:56547400-56561600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr6:56549600-56558000 Weak transcription HMEC breast
5 chr6:56549600-56573600 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr6:56549800-56578000 Weak transcription Gastric stomach
7 chr6:56553200-56558600 Active TSS Fetal Intestine Large intestine
8 chr6:56553200-56558600 Active TSS Fetal Intestine Small intestine
9 chr6:56553400-56558400 Active TSS Right Ventricle heart
10 chr6:56553600-56558400 Active TSS Colonic Mucosa Colon
11 chr6:56553600-56558400 Active TSS Stomach Smooth Muscle stomach
12 chr6:56553800-56558400 Active TSS Right Atrium heart
13 chr6:56553800-56560000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr6:56554000-56558400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr6:56554000-56560600 Weak transcription Placenta Amnion Placenta Amnion
16 chr6:56554000-56574600 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr6:56554200-56557800 Active TSS Brain Hippocampus Middle brain
18 chr6:56554400-56558400 Active TSS Psoas Muscle Psoas
19 chr6:56554400-56558400 Flanking Active TSS HepG2 liver
20 chr6:56554600-56558600 Flanking Active TSS Osteobl bone
21 chr6:56554800-56558000 Active TSS Brain Substantia Nigra brain
22 chr6:56555000-56558400 Active TSS Brain Cingulate Gyrus brain
23 chr6:56555000-56558400 Active TSS Brain Inferior Temporal Lobe brain
24 chr6:56555000-56558600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr6:56555200-56557600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
26 chr6:56555200-56558200 ZNF genes & repeats Fetal Brain Male brain
27 chr6:56555200-56558400 Active TSS Brain Angular Gyrus brain
28 chr6:56555200-56558600 Enhancers Fetal Heart heart
29 chr6:56555400-56557600 Active TSS Liver Liver
30 chr6:56555400-56557600 Active TSS Rectal Mucosa Donor 29 rectum
31 chr6:56555400-56558000 Active TSS Aorta Aorta
32 chr6:56555400-56558200 Active TSS Left Ventricle heart
33 chr6:56555400-56558400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr6:56555400-56558400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
35 chr6:56555400-56558400 Active TSS Fetal Lung lung
36 chr6:56555400-56558600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
37 chr6:56555400-56559400 Weak transcription GM12878-XiMat blood
38 chr6:56555400-56574600 Weak transcription H1 Cell Line embryonic stem cell
39 chr6:56555600-56557800 Active TSS Skeletal Muscle Male skeletal muscle
40 chr6:56555600-56558400 Active TSS Colon Smooth Muscle Colon
41 chr6:56555600-56559400 Weak transcription Small Intestine intestine
42 chr6:56555800-56557600 Active TSS Duodenum Smooth Muscle Duodenum
43 chr6:56555800-56558000 Weak transcription H9 Cell Line embryonic stem cell
44 chr6:56555800-56558200 Active TSS Fetal Stomach stomach
45 chr6:56555800-56558400 Active TSS Duodenum Mucosa Duodenum
46 chr6:56555800-56561200 Enhancers HUVEC blood vessel
47 chr6:56555800-56561800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr6:56555800-56573600 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr6:56556000-56557600 Active TSS HSMMtube muscle
50 chr6:56556000-56558000 Active TSS Breast Myoepithelial Primary Cells Breast

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