Variant report

Variant rs13213878
Chromosome Location chr6:56589841-56589842
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56570200-56590000 Weak transcription Right Atrium heart
2 chr6:56579400-56592000 Weak transcription Lung lung
3 chr6:56580800-56592000 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr6:56580800-56595800 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr6:56581000-56590000 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr6:56581200-56590200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr6:56581400-56592000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr6:56581600-56597800 Weak transcription Fetal Brain Male brain
9 chr6:56582600-56611600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr6:56583600-56591200 Weak transcription NHEK skin
11 chr6:56583800-56590800 Weak transcription HMEC breast
12 chr6:56584600-56593600 Weak transcription HUVEC blood vessel
13 chr6:56584800-56599800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr6:56586000-56590000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr6:56586200-56590000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr6:56586400-56595600 Weak transcription Adipose Nuclei Adipose
17 chr6:56586800-56592000 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr6:56586800-56593600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr6:56587200-56591000 Weak transcription GM12878-XiMat blood
20 chr6:56587400-56596200 Enhancers Stomach Mucosa stomach
21 chr6:56588000-56590400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr6:56588400-56592000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr6:56588400-56598000 Enhancers Osteobl bone
24 chr6:56588600-56590200 Enhancers Brain Anterior Caudate brain
25 chr6:56588600-56590200 Enhancers Stomach Smooth Muscle stomach
26 chr6:56588600-56590400 Enhancers H1 Cell Line embryonic stem cell
27 chr6:56588600-56590400 Enhancers Brain Substantia Nigra brain
28 chr6:56588600-56590400 Enhancers Psoas Muscle Psoas
29 chr6:56588600-56590400 Genic enhancers HSMM muscle
30 chr6:56588600-56590400 Enhancers NH-A brain
31 chr6:56588600-56590600 Enhancers Colon Smooth Muscle Colon
32 chr6:56588600-56591200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr6:56588600-56592200 Enhancers Muscle Satellite Cultured Cells --
34 chr6:56588600-56595200 Enhancers Fetal Intestine Small intestine
35 chr6:56588600-56596200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr6:56588800-56590600 Enhancers Brain Hippocampus Middle brain
37 chr6:56588800-56590800 Enhancers NHDF-Ad bronchial
38 chr6:56588800-56591000 Weak transcription Placenta Placenta
39 chr6:56588800-56591600 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr6:56588800-56592600 Enhancers HepG2 liver
41 chr6:56588800-56593200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr6:56588800-56594600 Enhancers A549 lung
43 chr6:56588800-56595800 Weak transcription Left Ventricle heart
44 chr6:56588800-56603400 Weak transcription Right Ventricle heart
45 chr6:56589000-56590000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr6:56589000-56590400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr6:56589000-56590400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr6:56589000-56590400 Enhancers Brain Cingulate Gyrus brain
49 chr6:56589000-56593200 Enhancers iPS-18 Cell Line embryonic stem cell
50 chr6:56589200-56590200 Enhancers Brain Dorsolateral Prefrontal Cortex brain

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