Variant report

Variant rs13196211
Chromosome Location chr6:56562495-56562496
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56546200-56564800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr6:56549600-56573600 Weak transcription iPS-18 Cell Line embryonic stem cell
3 chr6:56549800-56578000 Weak transcription Gastric stomach
4 chr6:56554000-56574600 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr6:56555400-56574600 Weak transcription H1 Cell Line embryonic stem cell
6 chr6:56555800-56573600 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr6:56556000-56568400 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr6:56556200-56573600 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr6:56556200-56574400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr6:56556400-56568000 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr6:56558200-56563400 Weak transcription Primary monocytes fromperipheralblood blood
12 chr6:56558200-56563600 Weak transcription Monocytes-CD14+_RO01746 blood
13 chr6:56558200-56569800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr6:56558200-56573400 Weak transcription Stomach Mucosa stomach
15 chr6:56558200-56578200 Weak transcription Aorta Aorta
16 chr6:56558400-56563400 Weak transcription Brain Angular Gyrus brain
17 chr6:56558400-56563600 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr6:56558400-56563600 Weak transcription Stomach Smooth Muscle stomach
19 chr6:56558400-56566400 Weak transcription Colon Smooth Muscle Colon
20 chr6:56558400-56567000 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr6:56558400-56571600 Weak transcription Fetal Stomach stomach
22 chr6:56558400-56573200 Weak transcription Adipose Nuclei Adipose
23 chr6:56558400-56577800 Weak transcription Ovary ovary
24 chr6:56558400-56579400 Weak transcription Right Ventricle heart
25 chr6:56558600-56566400 Weak transcription Rectal Smooth Muscle rectum
26 chr6:56558600-56577800 Weak transcription Fetal Heart heart
27 chr6:56559200-56563000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
28 chr6:56559400-56563000 Strong transcription HSMMtube muscle
29 chr6:56559400-56563800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr6:56559600-56562600 Weak transcription Liver Liver
31 chr6:56559600-56563200 Strong transcription HSMM muscle
32 chr6:56559600-56572600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr6:56559600-56573000 Weak transcription NH-A brain
34 chr6:56559800-56577800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:56560200-56579800 Weak transcription Fetal Muscle Leg muscle
36 chr6:56560400-56569800 Weak transcription Brain Anterior Caudate brain
37 chr6:56560400-56577200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr6:56560600-56562800 Enhancers A549 lung
39 chr6:56560600-56563600 Weak transcription Brain Cingulate Gyrus brain
40 chr6:56560600-56572200 Weak transcription NHDF-Ad bronchial
41 chr6:56560600-56572400 Weak transcription HMEC breast
42 chr6:56561200-56563600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr6:56561200-56568400 Weak transcription HUVEC blood vessel
44 chr6:56561200-56571800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr6:56561400-56573200 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr6:56561800-56562600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr6:56561800-56563000 Enhancers Psoas Muscle Psoas
48 chr6:56561800-56564000 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr6:56561800-56564000 Enhancers Brain Substantia Nigra brain
50 chr6:56561800-56564000 Enhancers Skeletal Muscle Female skeletal muscle

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