Variant report

Variant rs71564848
Chromosome Location chr6:56549053-56549054
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56526400-56549200 Weak transcription HUES48 Cell Line embryonic stem cell
2 chr6:56527000-56554400 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr6:56529600-56553800 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr6:56535200-56555200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr6:56535600-56549200 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr6:56537000-56551800 Weak transcription Esophagus oesophagus
7 chr6:56537200-56553400 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr6:56537200-56555200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:56537600-56552600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr6:56537600-56553600 Weak transcription Fetal Stomach stomach
11 chr6:56537800-56549400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr6:56538000-56549200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr6:56543000-56559400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr6:56544200-56549200 Weak transcription Right Atrium heart
15 chr6:56545600-56553400 Enhancers Brain Hippocampus Middle brain
16 chr6:56546200-56552400 Enhancers Brain Substantia Nigra brain
17 chr6:56546200-56564800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr6:56546800-56555400 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr6:56547000-56549800 Enhancers Sigmoid Colon Sigmoid Colon
20 chr6:56547200-56549200 Enhancers HepG2 liver
21 chr6:56547200-56552200 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr6:56547200-56552400 Enhancers Brain Angular Gyrus brain
23 chr6:56547200-56553400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr6:56547200-56554000 Enhancers Brain Cingulate Gyrus brain
25 chr6:56547200-56557400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr6:56547400-56549200 Enhancers Fetal Intestine Small intestine
27 chr6:56547400-56549600 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr6:56547400-56549600 Enhancers Colon Smooth Muscle Colon
29 chr6:56547400-56552400 Enhancers Brain Inferior Temporal Lobe brain
30 chr6:56547400-56552400 Enhancers Ovary ovary
31 chr6:56547400-56552800 Enhancers Brain Anterior Caudate brain
32 chr6:56547400-56561600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr6:56547600-56549200 Weak transcription Left Ventricle heart
34 chr6:56547600-56549600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
35 chr6:56547600-56550400 Enhancers Fetal Lung lung
36 chr6:56547800-56549200 Weak transcription Fetal Muscle Leg muscle
37 chr6:56547800-56549400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr6:56547800-56549600 Enhancers Pancreatic Islets Pancreatic Islet
39 chr6:56547800-56549800 Strong transcription GM12878-XiMat blood
40 chr6:56547800-56551800 Weak transcription Right Ventricle heart
41 chr6:56548000-56549400 Enhancers Rectal Mucosa Donor 31 rectum
42 chr6:56548000-56549400 Enhancers NHEK skin
43 chr6:56548000-56549600 Enhancers Stomach Mucosa stomach
44 chr6:56548000-56549600 Enhancers HMEC breast
45 chr6:56548000-56551000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
46 chr6:56548200-56549400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr6:56548200-56549400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr6:56548200-56549600 Enhancers NHLF lung
49 chr6:56548200-56549800 Enhancers Fetal Intestine Large intestine
50 chr6:56548200-56550000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung

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