The 2.0 version of rSNPBase

Variant report

Variant rs6916813
Chromosome Location chr6:56539052-56539053
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:56526400-56540400 Weak transcription iPS-20b Cell Line embryonic stem cell
2 chr6:56526400-56549200 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr6:56527000-56554400 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr6:56529600-56553800 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr6:56532600-56547200 Weak transcription HepG2 liver
6 chr6:56535200-56555200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
7 chr6:56535600-56548600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr6:56535600-56549200 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr6:56537000-56539200 Enhancers Fetal Intestine Large intestine
10 chr6:56537000-56539400 Enhancers Fetal Intestine Small intestine
11 chr6:56537000-56539800 Enhancers Brain Hippocampus Middle brain
12 chr6:56537000-56542000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:56537000-56551800 Weak transcription Esophagus oesophagus
14 chr6:56537200-56540400 Enhancers Brain Substantia Nigra brain
15 chr6:56537200-56542000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr6:56537200-56542000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr6:56537200-56542000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr6:56537200-56542000 Weak transcription Psoas Muscle Psoas
19 chr6:56537200-56542000 Weak transcription Right Ventricle heart
20 chr6:56537200-56542000 Weak transcription HMEC breast
21 chr6:56537200-56542000 Weak transcription NHDF-Ad bronchial
22 chr6:56537200-56542200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr6:56537200-56542200 Weak transcription Aorta Aorta
24 chr6:56537200-56542200 Weak transcription A549 lung
25 chr6:56537200-56542200 Weak transcription NHEK skin
26 chr6:56537200-56542400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr6:56537200-56542400 Weak transcription NH-A brain
28 chr6:56537200-56542600 Weak transcription Lung lung
29 chr6:56537200-56542600 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr6:56537200-56545200 Weak transcription Ovary ovary
31 chr6:56537200-56545400 Weak transcription Gastric stomach
32 chr6:56537200-56547400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr6:56537200-56548000 Weak transcription Stomach Mucosa stomach
34 chr6:56537200-56548200 Weak transcription Small Intestine intestine
35 chr6:56537200-56548600 Weak transcription Colonic Mucosa Colon
36 chr6:56537200-56553400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr6:56537200-56555200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr6:56537400-56548400 Weak transcription Adipose Nuclei Adipose
39 chr6:56537600-56542000 Weak transcription Fetal Heart heart
40 chr6:56537600-56542000 Weak transcription HUVEC blood vessel
41 chr6:56537600-56542200 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr6:56537600-56542200 Weak transcription HSMMtube muscle
43 chr6:56537600-56542400 Weak transcription Colon Smooth Muscle Colon
44 chr6:56537600-56542400 Weak transcription HSMM muscle
45 chr6:56537600-56542400 Weak transcription NHLF lung
46 chr6:56537600-56546400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr6:56537600-56547400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr6:56537600-56547400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr6:56537600-56547400 Weak transcription Fetal Lung lung
50 chr6:56537600-56548000 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015