Variant report

Variant rs56992523
Chromosome Location chr19:53278387-53278388
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53264600-53285200 ZNF genes & repeats Liver Liver
2 chr19:53265600-53282400 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
3 chr19:53268400-53278600 Weak transcription Brain Cingulate Gyrus brain
4 chr19:53268400-53279200 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
5 chr19:53269000-53282000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr19:53270400-53287000 Weak transcription H1 Cell Line embryonic stem cell
7 chr19:53270400-53288800 Weak transcription Osteobl bone
8 chr19:53270400-53289000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr19:53270400-53289200 Weak transcription NHLF lung
10 chr19:53270400-53289400 Weak transcription Brain Anterior Caudate brain
11 chr19:53270600-53289200 Weak transcription Brain Substantia Nigra brain
12 chr19:53270800-53278400 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr19:53270800-53288000 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr19:53270800-53288000 Weak transcription HepG2 liver
15 chr19:53270800-53289400 Weak transcription Fetal Muscle Trunk muscle
16 chr19:53271000-53281200 Weak transcription Muscle Satellite Cultured Cells --
17 chr19:53271200-53289200 Weak transcription Brain Hippocampus Middle brain
18 chr19:53271400-53282000 ZNF genes & repeats Primary monocytes fromperipheralblood blood
19 chr19:53271600-53280800 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr19:53271600-53286400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr19:53271600-53289000 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr19:53271800-53278800 Weak transcription NHDF-Ad bronchial
23 chr19:53272000-53287600 Weak transcription Primary T cells from cord blood blood
24 chr19:53272400-53282200 Strong transcription HUES6 Cell Line embryonic stem cell
25 chr19:53272800-53279800 Strong transcription Rectal Smooth Muscle rectum
26 chr19:53272800-53281200 Strong transcription Rectal Mucosa Donor 31 rectum
27 chr19:53272800-53281600 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr19:53273600-53279200 Strong transcription Ovary ovary
29 chr19:53273600-53288600 Weak transcription K562 blood
30 chr19:53273600-53289400 Weak transcription Colon Smooth Muscle Colon
31 chr19:53273800-53289200 Weak transcription Psoas Muscle Psoas
32 chr19:53274200-53278400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
33 chr19:53274200-53288600 Weak transcription Placenta Amnion Placenta Amnion
34 chr19:53274400-53282600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr19:53274600-53278400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
36 chr19:53274600-53279200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr19:53275200-53279200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr19:53275400-53279000 ZNF genes & repeats Primary B cells from cord blood blood
39 chr19:53275400-53285200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr19:53275600-53279200 Strong transcription Placenta Placenta
41 chr19:53275600-53282200 Strong transcription Stomach Smooth Muscle stomach
42 chr19:53275600-53282600 Strong transcription Sigmoid Colon Sigmoid Colon
43 chr19:53275600-53284800 Weak transcription Stomach Mucosa stomach
44 chr19:53275800-53285400 Weak transcription Fetal Thymus thymus
45 chr19:53276000-53279200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr19:53276000-53280000 Strong transcription Adipose Nuclei Adipose
47 chr19:53276000-53281000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr19:53276000-53284400 Strong transcription Duodenum Mucosa Duodenum
49 chr19:53276200-53280400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr19:53276200-53281400 Weak transcription Gastric stomach

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