Variant report

Variant	rs57244060
Chromosome Location	chr20:24744393-24744394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1474777	1.00[AMR][1000 genomes]
rs4398330	1.00[AMR][1000 genomes]
rs4546069	1.00[AMR][1000 genomes]
rs57111044	1.00[AMR][1000 genomes]
rs60563133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7270947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903530	1.00[AMR][1000 genomes]
rs73903536	1.00[AMR][1000 genomes]
rs73903543	1.00[AMR][1000 genomes]
rs73903553	1.00[AMR][1000 genomes]
rs73903583	1.00[AMR][1000 genomes]
rs73903949	1.00[AMR][1000 genomes]
rs73903951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903959	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905444	1.00[AMR][1000 genomes]
rs73905449	1.00[AMR][1000 genomes]
rs8114121	1.00[AMR][1000 genomes]
rs8118505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24742000-24744600	Enhancers	Fetal Thymus	thymus
2	chr20:24742800-24748800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:24743200-24744400	Enhancers	Thymus	Thymus
4	chr20:24743200-24744600	Enhancers	Primary hematopoietic stem cells	blood
5	chr20:24743200-24744600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:24743400-24744400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
7	chr20:24743400-24744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:24743800-24744600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr20:24744000-24744400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr20:24744000-24744600	Enhancers	Primary B cells from peripheral blood	blood
11	chr20:24744200-24744400	Enhancers	Brain Hippocampus Middle	brain
12	chr20:24744200-24744400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr20:24744200-24744600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:24744200-24746200	Weak transcription	Primary B cells from cord blood	blood

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