Variant report

Variant	rs73903949
Chromosome Location	chr20:24767127-24767128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1474777	1.00[AMR][1000 genomes]
rs4398330	1.00[AMR][1000 genomes]
rs4546069	1.00[AMR][1000 genomes]
rs57111044	1.00[AMR][1000 genomes]
rs57244060	1.00[AMR][1000 genomes]
rs60563133	1.00[AMR][1000 genomes]
rs7270947	1.00[AMR][1000 genomes]
rs73903517	1.00[AMR][1000 genomes]
rs73903518	1.00[AMR][1000 genomes]
rs73903527	1.00[AMR][1000 genomes]
rs73903530	1.00[AMR][1000 genomes]
rs73903536	1.00[AMR][1000 genomes]
rs73903543	1.00[AMR][1000 genomes]
rs73903553	1.00[AMR][1000 genomes]
rs73903583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903951	1.00[AMR][1000 genomes]
rs73903959	1.00[AMR][1000 genomes]
rs73905444	1.00[AMR][1000 genomes]
rs73905449	1.00[AMR][1000 genomes]
rs8114121	1.00[AMR][1000 genomes]
rs8118505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24758800-24767400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr20:24764000-24770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24764600-24770000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:24765000-24768000	Enhancers	Placenta	Placenta
5	chr20:24765800-24767200	Enhancers	Fetal Muscle Trunk	muscle
6	chr20:24766600-24769800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr20:24767000-24770000	Weak transcription	Lung	lung
8	chr20:24767000-24770600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links