Variant report

Variant	rs73903583
Chromosome Location	chr20:24751775-24751776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24751479..24753898-chr20:24757094..24759323,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1474777	1.00[AMR][1000 genomes]
rs4398330	1.00[AMR][1000 genomes]
rs4546069	1.00[AMR][1000 genomes]
rs57111044	1.00[AMR][1000 genomes]
rs57244060	1.00[AMR][1000 genomes]
rs60563133	1.00[AMR][1000 genomes]
rs7270947	1.00[AMR][1000 genomes]
rs73903517	1.00[AMR][1000 genomes]
rs73903518	1.00[AMR][1000 genomes]
rs73903527	1.00[AMR][1000 genomes]
rs73903530	1.00[AMR][1000 genomes]
rs73903536	1.00[AMR][1000 genomes]
rs73903543	1.00[AMR][1000 genomes]
rs73903553	1.00[AMR][1000 genomes]
rs73903949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903951	1.00[AMR][1000 genomes]
rs73903959	1.00[AMR][1000 genomes]
rs73905444	1.00[AMR][1000 genomes]
rs73905449	1.00[AMR][1000 genomes]
rs8114121	1.00[AMR][1000 genomes]
rs8118505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1061455	chr20:24733120-24861801	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv544218	chr20:24733120-24861801	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1059270	chr20:24741923-24787243	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24745400-24755600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24747800-24752000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr20:24749200-24763600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:24749800-24752600	Weak transcription	NH-A	brain
5	chr20:24751000-24752800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr20:24751000-24761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:24751200-24752000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:24751400-24752800	Enhancers	Lung	lung
9	chr20:24751400-24755000	Enhancers	Fetal Thymus	thymus
10	chr20:24751400-24755000	Enhancers	Thymus	Thymus
11	chr20:24751600-24752400	Enhancers	Primary hematopoietic stem cells	blood
12	chr20:24751600-24753000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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