Variant report

Variant	rs73905449
Chromosome Location	chr20:24711469-24711470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1474777	1.00[AMR][1000 genomes]
rs4398330	1.00[AMR][1000 genomes]
rs4546069	1.00[AMR][1000 genomes]
rs57111044	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57244060	1.00[AMR][1000 genomes]
rs58971001	1.00[AFR][1000 genomes]
rs60563133	1.00[AMR][1000 genomes]
rs7270947	1.00[AMR][1000 genomes]
rs73903517	1.00[AMR][1000 genomes]
rs73903518	1.00[AMR][1000 genomes]
rs73903527	1.00[AMR][1000 genomes]
rs73903530	1.00[AMR][1000 genomes]
rs73903536	1.00[AMR][1000 genomes]
rs73903543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73903553	1.00[AMR][1000 genomes]
rs73903583	1.00[AMR][1000 genomes]
rs73903949	1.00[AMR][1000 genomes]
rs73903951	1.00[AMR][1000 genomes]
rs73903959	1.00[AMR][1000 genomes]
rs73905444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905445	1.00[AFR][1000 genomes]
rs73905446	1.00[AFR][1000 genomes]
rs73905447	1.00[AFR][1000 genomes]
rs8114121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8118505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3386739	chr20:24707152-24711550	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24710000-24718000	Weak transcription	Spleen	Spleen
2	chr20:24711400-24711600	Strong transcription	Thymus	Thymus

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