Variant report

Variant	rs57288936
Chromosome Location	chr8:35799369-35799370
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58984544	1.00[AMR][1000 genomes]
rs73576363	1.00[AMR][1000 genomes]
rs73584199	1.00[AMR][1000 genomes]
rs73584201	1.00[AMR][1000 genomes]
rs73586104	1.00[AMR][1000 genomes]
rs73586106	1.00[AMR][1000 genomes]
rs73586109	1.00[AMR][1000 genomes]
rs73586115	1.00[AMR][1000 genomes]
rs73586166	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586169	1.00[AMR][1000 genomes]
rs73586179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35797200-35800000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr8:35797400-35800800	Weak transcription	Brain Hippocampus Middle	brain
3	chr8:35798000-35802000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:35798200-35801800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:35798200-35803000	Weak transcription	Brain Germinal Matrix	brain
6	chr8:35798400-35801800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:35798400-35801800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:35798400-35802600	Weak transcription	Brain Substantia Nigra	brain
9	chr8:35798600-35801600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:35798600-35801800	Weak transcription	Fetal Intestine Small	intestine
11	chr8:35798800-35801800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:35799000-35799400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:35799200-35799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:35799200-35799400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:35799200-35801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:35799200-35802000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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