Variant report

Variant	rs57300813
Chromosome Location	chr3:18036874-18036875
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:18017415..18021031-chr3:18035820..18038949,3	K562	blood:
2	chr3:18030487..18032967-chr3:18035633..18037527,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLCL2-2	chr3:18036734-18037036	ENSG00000226238

Variant related genes	Relation type
ENSG00000226238	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs4130062	1.00[EUR][1000 genomes]
rs56340351	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57708845	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191131	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60854259	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61298019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240202	0.89[ASN][1000 genomes]
rs62240203	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240204	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73817415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73817418	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73817420	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73817436	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73817437	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73817438	0.98[EUR][1000 genomes]
rs73817442	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73817444	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73817453	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7610587	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616199	1.00[EUR][1000 genomes]
rs7624278	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7639295	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9824023	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18029600-18037400	Weak transcription	Thymus	Thymus
2	chr3:18034200-18037000	Weak transcription	Dnd41	blood
3	chr3:18036600-18037800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:18036800-18037600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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