Variant report

Variant	rs57327069
Chromosome Location	chr11:66896401-66896402
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66894856..66897785-chr11:66899004..66901222,2	K562	blood:
2	chr11:66895211..66897968-chr11:66901907..66905138,3	MCF-7	breast:
3	chr11:66889491..66892272-chr11:66894214..66896649,2	MCF-7	breast:
4	chr11:66884825..66888738-chr11:66895798..66897785,3	MCF-7	breast:
5	chr11:66884732..66891772-chr11:66894798..66900811,8	K562	blood:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10400320	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732253	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10750796	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1253784	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894111	1.00[EUR][1000 genomes]
rs3741189	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3825022	1.00[EUR][1000 genomes]
rs4271388	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4344498	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4457752	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57478329	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57724865	1.00[EUR][1000 genomes]
rs58224869	1.00[EUR][1000 genomes]
rs59057433	1.00[EUR][1000 genomes]
rs59817822	0.94[EUR][1000 genomes]
rs61663253	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs645387	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs655168	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682509	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937611	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66887800-66899600	Weak transcription	Spleen	Spleen
2	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:66888800-66897600	Weak transcription	Stomach Mucosa	stomach
4	chr11:66888800-66898600	Weak transcription	Gastric	stomach
5	chr11:66888800-66902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:66889000-66899400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:66889000-66900000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:66889000-66901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:66889200-66899200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:66889200-66901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:66889600-66899200	Weak transcription	NHDF-Ad	bronchial
14	chr11:66889600-66899400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:66889600-66899800	Weak transcription	Colonic Mucosa	Colon
16	chr11:66889800-66899200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:66889800-66899200	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:66889800-66900000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:66889800-66901400	Weak transcription	A549	lung
20	chr11:66889800-66902000	Weak transcription	HUVEC	blood vessel
21	chr11:66889800-66902200	Weak transcription	Aorta	Aorta
22	chr11:66889800-66902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:66889800-66903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:66890000-66898000	Weak transcription	HSMM	muscle
26	chr11:66890000-66898400	Weak transcription	Small Intestine	intestine
27	chr11:66890000-66898800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:66890000-66901400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:66890000-66901600	Weak transcription	HSMMtube	muscle
30	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
31	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
32	chr11:66890200-66899600	Weak transcription	Ovary	ovary
33	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr11:66890600-66896800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:66890800-66896600	Strong transcription	Fetal Intestine Large	intestine
37	chr11:66890800-66897800	Strong transcription	Fetal Intestine Small	intestine
38	chr11:66890800-66900200	Weak transcription	Fetal Brain Male	brain
39	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
41	chr11:66891200-66897800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:66891200-66897800	Weak transcription	HepG2	liver
43	chr11:66891200-66900200	Weak transcription	Brain Angular Gyrus	brain
44	chr11:66891200-66901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:66891400-66899000	Weak transcription	Left Ventricle	heart
46	chr11:66891400-66899400	Weak transcription	Brain Anterior Caudate	brain
47	chr11:66891400-66899400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:66891400-66899800	Weak transcription	Esophagus	oesophagus
49	chr11:66891400-66900000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr11:66891400-66901200	Weak transcription	Pancreas	Pancrea

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