Variant report

Variant	rs655168
Chromosome Location	chr11:66919278-66919279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66912440..66914149-chr11:66918816..66921683,2	K562	blood:
2	chr11:66902270..66904217-chr11:66917736..66919839,2	MCF-7	breast:
3	chr11:66906010..66907548-chr11:66917711..66919928,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400320	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732253	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10750796	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227699	1.00[GIH][hapmap]
rs11227771	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs1253784	1.00[ASW][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894111	1.00[EUR][1000 genomes]
rs3741189	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3825022	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4271388	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4344498	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4457752	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57327069	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57478329	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57724865	1.00[EUR][1000 genomes]
rs58224869	1.00[EUR][1000 genomes]
rs59057433	1.00[EUR][1000 genomes]
rs59817822	0.94[EUR][1000 genomes]
rs61663253	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs645387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs682509	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941655	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
6	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:66900400-66921200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
12	chr11:66902400-66920600	Weak transcription	Ovary	ovary
13	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:66904200-66919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:66904400-66922800	Weak transcription	Colonic Mucosa	Colon
17	chr11:66904400-66934000	Weak transcription	K562	blood
18	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
21	chr11:66905200-66924600	Strong transcription	Fetal Intestine Small	intestine
22	chr11:66905200-66925200	Weak transcription	Brain Anterior Caudate	brain
23	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:66906200-66925600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:66906600-66925600	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:66907600-66922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:66907800-66928600	Weak transcription	NHLF	lung
28	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
29	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
30	chr11:66908800-66925400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:66910400-66923000	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:66910600-66919800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:66910600-66921400	Strong transcription	Primary T cells from cord blood	blood
34	chr11:66911600-66925400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:66912800-66921800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:66913200-66922400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr11:66913600-66922400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:66914000-66919800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:66914000-66920400	Strong transcription	Placenta	Placenta
40	chr11:66914000-66921400	Strong transcription	Dnd41	blood
41	chr11:66914400-66920400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:66914400-66921400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:66914400-66929000	Weak transcription	Stomach Mucosa	stomach
44	chr11:66914800-66923000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:66915000-66923000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:66915400-66920000	Strong transcription	HepG2	liver
47	chr11:66915800-66919600	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr11:66915800-66919800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:66915800-66920000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:66916200-66920400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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