Variant report

Variant	rs58224869
Chromosome Location	chr11:67102322-67102323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400320	1.00[EUR][1000 genomes]
rs10732253	1.00[EUR][1000 genomes]
rs10750796	1.00[EUR][1000 genomes]
rs1253784	1.00[EUR][1000 genomes]
rs1894111	1.00[EUR][1000 genomes]
rs2228522	0.88[ASN][1000 genomes]
rs3741189	1.00[EUR][1000 genomes]
rs3825022	1.00[EUR][1000 genomes]
rs4271388	0.89[EUR][1000 genomes]
rs4344498	1.00[EUR][1000 genomes]
rs4457752	0.88[EUR][1000 genomes]
rs57327069	1.00[EUR][1000 genomes]
rs57478329	0.81[EUR][1000 genomes]
rs57724865	1.00[EUR][1000 genomes]
rs58423665	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59057433	1.00[EUR][1000 genomes]
rs59817822	0.94[EUR][1000 genomes]
rs61663253	0.94[EUR][1000 genomes]
rs61739507	0.85[ASN][1000 genomes]
rs645387	1.00[EUR][1000 genomes]
rs655168	1.00[EUR][1000 genomes]
rs682509	1.00[EUR][1000 genomes]
rs7937611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67086000-67104400	Weak transcription	Aorta	Aorta
2	chr11:67086200-67113600	Weak transcription	Osteobl	bone
3	chr11:67086400-67102800	Weak transcription	Liver	Liver
4	chr11:67086400-67104000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:67086400-67110200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:67086400-67111200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:67086400-67111600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:67086400-67112600	Weak transcription	Fetal Lung	lung
9	chr11:67086400-67120000	Weak transcription	Brain Germinal Matrix	brain
10	chr11:67086600-67103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:67086600-67111200	Weak transcription	Primary B cells from cord blood	blood
12	chr11:67086600-67111200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:67086600-67118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:67086800-67118800	Weak transcription	Fetal Brain Male	brain
15	chr11:67087000-67111800	Weak transcription	Gastric	stomach
16	chr11:67087000-67112800	Weak transcription	Hela-S3	cervix
17	chr11:67087000-67113400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:67087800-67113800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:67087800-67119000	Weak transcription	Fetal Brain Female	brain
20	chr11:67088000-67103000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:67089400-67116800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:67089800-67117000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:67090000-67118600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:67090200-67115400	Weak transcription	Lung	lung
25	chr11:67090400-67111200	Weak transcription	Spleen	Spleen
26	chr11:67090800-67111800	Weak transcription	Pancreas	Pancrea
27	chr11:67091000-67105800	Weak transcription	Brain Angular Gyrus	brain
28	chr11:67091200-67109400	Weak transcription	Fetal Stomach	stomach
29	chr11:67091400-67112800	Weak transcription	Esophagus	oesophagus
30	chr11:67095000-67105200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:67096400-67111800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:67098600-67111800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:67099200-67118600	Weak transcription	Thymus	Thymus
34	chr11:67099600-67105000	Weak transcription	Left Ventricle	heart
35	chr11:67100600-67107000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:67100600-67113000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:67101000-67112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:67101000-67112600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:67101000-67113600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:67101200-67104200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:67101200-67109200	Weak transcription	Fetal Intestine Small	intestine
42	chr11:67101200-67112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:67101600-67112600	Weak transcription	Fetal Intestine Large	intestine
44	chr11:67101600-67116400	Weak transcription	Right Ventricle	heart
45	chr11:67101600-67118600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:67101600-67118600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:67101800-67104000	Weak transcription	Ovary	ovary
48	chr11:67101800-67112600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links