Variant report

Variant	rs61663253
Chromosome Location	chr11:66888585-66888586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66812155..66813969-chr11:66888125..66890651,2	K562	blood:
2	chr11:66845358..66847387-chr11:66887681..66889198,2	MCF-7	breast:
3	chr11:66885002..66889173-chr11:67005085..67009324,11	K562	blood:
4	chr11:66884916..66890908-chr11:67005112..67010354,8	MCF-7	breast:
5	chr11:66821404..66826403-chr11:66884710..66889541,16	MCF-7	breast:
6	chr11:66883623..66889678-chr11:67005085..67009894,16	K562	blood:
7	chr11:66888331..66890567-chr11:66897930..66899479,2	MCF-7	breast:
8	chr11:66887881..66889769-chr11:66929494..66931769,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173156	Chromatin interaction
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10400320	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10732253	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10750796	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1253784	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1894111	0.94[EUR][1000 genomes]
rs3741189	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3825022	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4271388	0.84[EUR][1000 genomes]
rs4344498	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4457752	0.81[EUR][1000 genomes]
rs57327069	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57478329	0.85[ASN][1000 genomes]
rs57724865	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58224869	0.94[EUR][1000 genomes]
rs59057433	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59817822	0.89[EUR][1000 genomes]
rs645387	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs655168	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs682509	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7937611	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66884800-66888800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr11:66884800-66889200	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr11:66885000-66888600	Active TSS	Brain Substantia Nigra	brain
4	chr11:66885000-66888800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:66885000-66888800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:66885000-66889000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:66885000-66889000	Active TSS	Lung	lung
8	chr11:66885000-66889000	Active TSS	Osteobl	bone
9	chr11:66885000-66889200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:66885000-66889600	Active TSS	Psoas Muscle	Psoas
11	chr11:66885000-66889800	Active TSS	Fetal Brain Female	brain
12	chr11:66885000-66889800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr11:66885200-66888600	Active TSS	Duodenum Mucosa	Duodenum
14	chr11:66885200-66888600	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr11:66885200-66888800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr11:66885200-66888800	Active TSS	Esophagus	oesophagus
17	chr11:66885200-66888800	Active TSS	Gastric	stomach
18	chr11:66885200-66889000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:66885200-66889000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr11:66885200-66889000	Active TSS	Brain Angular Gyrus	brain
21	chr11:66885200-66889000	Active TSS	Colon Smooth Muscle	Colon
22	chr11:66885200-66889000	Active TSS	Placenta Amnion	Placenta Amnion
23	chr11:66885200-66889200	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr11:66885200-66889200	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr11:66885200-66889200	Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr11:66885200-66889400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr11:66885200-66889400	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr11:66885200-66889400	Active TSS	Brain Hippocampus Middle	brain
29	chr11:66885200-66889600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:66885200-66889600	Active TSS	Ovary	ovary
31	chr11:66885200-66889800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr11:66885200-66889800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:66885200-66890000	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:66885200-66890000	Active TSS	HSMM	muscle
35	chr11:66885200-66890400	Active TSS	Brain Germinal Matrix	brain
36	chr11:66885200-66890600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:66885400-66888600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:66885400-66888600	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr11:66885400-66888600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:66885400-66888600	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr11:66885400-66888600	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr11:66885400-66888800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:66885400-66888800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:66885400-66888800	Active TSS	Small Intestine	intestine
45	chr11:66885400-66888800	Active TSS	Monocytes-CD14+_RO01746	blood
46	chr11:66885400-66889000	Active TSS	Primary T cells fromperipheralblood	blood
47	chr11:66885400-66889000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:66885400-66889000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr11:66885400-66889000	Active TSS	Fetal Muscle Trunk	muscle
50	chr11:66885400-66889000	Active TSS	Placenta	Placenta

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