Variant report

Variant	rs57478329
Chromosome Location	chr11:66874619-66874620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10400320	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732253	0.81[EUR][1000 genomes]
rs10750796	0.81[EUR][1000 genomes]
rs1253784	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894111	0.81[EUR][1000 genomes]
rs3741189	0.81[EUR][1000 genomes]
rs3825022	0.81[EUR][1000 genomes]
rs4271388	0.86[ASN][1000 genomes]
rs4344498	0.81[EUR][1000 genomes]
rs4457752	0.86[ASN][1000 genomes]
rs57327069	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57724865	0.81[EUR][1000 genomes]
rs58224869	0.81[EUR][1000 genomes]
rs59057433	0.81[EUR][1000 genomes]
rs61663253	0.85[ASN][1000 genomes]
rs645387	0.81[EUR][1000 genomes]
rs655168	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682509	0.81[EUR][1000 genomes]
rs7937611	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66871600-66884200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66871800-66875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:66871800-66875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:66871800-66880400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:66872200-66875000	Weak transcription	K562	blood
7	chr11:66873600-66880400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:66873800-66878400	Weak transcription	Fetal Heart	heart
9	chr11:66873800-66878800	Weak transcription	Right Atrium	heart
10	chr11:66874200-66878400	Weak transcription	Fetal Thymus	thymus
11	chr11:66874600-66878600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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