Variant report

Variant	rs57341434
Chromosome Location	chr14:65641257-65641258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65635954..65639205-chr14:65640166..65643842,3	MCF-7	breast:
2	chr14:65640216..65642886-chr14:65645703..65648052,2	MCF-7	breast:
3	chr14:65641252..65644123-chr14:65876327..65878727,2	MCF-7	breast:
4	chr14:65639777..65642769-chr14:65644370..65646796,2	K562	blood:
5	chr14:65637279..65639473-chr14:65641141..65644140,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131798	0.89[EUR][1000 genomes]
rs55650089	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176753	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57901560	0.89[EUR][1000 genomes]
rs58501174	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60582452	1.00[ASN][1000 genomes]
rs61244338	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61607569	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154885	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155272	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160899	0.89[EUR][1000 genomes]
rs74056688	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74056690	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74056693	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056696	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056698	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056699	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056700	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8020793	0.89[EUR][1000 genomes]
rs8022029	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65638000-65646600	Weak transcription	Pancreas	Pancrea
2	chr14:65638000-65646600	Weak transcription	Right Atrium	heart
3	chr14:65638200-65644400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65638200-65645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65638200-65646400	Weak transcription	A549	lung
6	chr14:65640200-65641600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65640400-65641600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:65640400-65641600	Enhancers	Fetal Brain Male	brain
9	chr14:65640400-65641800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65640400-65641800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:65640400-65641800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:65640600-65641400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:65640600-65641600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr14:65640600-65641600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:65640600-65641600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:65640600-65641600	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr14:65640600-65641600	Enhancers	Fetal Heart	heart
18	chr14:65640600-65641600	Enhancers	Ovary	ovary
19	chr14:65640600-65641600	Enhancers	GM12878-XiMat	blood
20	chr14:65640600-65641800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr14:65640800-65641400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:65640800-65641600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr14:65640800-65641600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:65640800-65641600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:65640800-65641600	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr14:65640800-65641600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr14:65640800-65641600	Enhancers	NH-A	brain
28	chr14:65640800-65641600	Enhancers	NHDF-Ad	bronchial
29	chr14:65640800-65641800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr14:65640800-65641800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr14:65641000-65641400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr14:65641000-65641400	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr14:65641000-65641600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:65641000-65641600	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr14:65641000-65641600	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr14:65641000-65641600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:65641000-65641600	Enhancers	Fetal Intestine Small	intestine
38	chr14:65641000-65641600	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr14:65641000-65641600	Enhancers	Left Ventricle	heart
40	chr14:65641000-65641600	Flanking Active TSS	HepG2	liver
41	chr14:65641000-65641800	Enhancers	Fetal Brain Female	brain
42	chr14:65641200-65641400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:65641200-65641400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr14:65641200-65641400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:65641200-65641400	Bivalent Enhancer	Fetal Lung	lung
46	chr14:65641200-65641600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:65641200-65641600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:65641200-65641600	Enhancers	Right Ventricle	heart
49	chr14:65641200-65641800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr14:65641200-65641800	Enhancers	Brain Germinal Matrix	brain

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