Variant report

Variant	rs61607569
Chromosome Location	chr14:65644222-65644223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65642446..65645436-chr14:65699678..65702269,2	MCF-7	breast:
2	chr14:65643251..65645362-chr14:65877953..65879634,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131798	0.93[EUR][1000 genomes]
rs55650089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57176753	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57341434	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57901560	0.93[EUR][1000 genomes]
rs58501174	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60582452	0.96[ASN][1000 genomes]
rs61244338	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154885	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155272	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160899	0.93[EUR][1000 genomes]
rs74056688	0.96[ASN][1000 genomes]
rs74056690	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs74056693	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056696	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056698	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056699	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056700	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020793	0.93[EUR][1000 genomes]
rs8022029	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65638000-65646600	Weak transcription	Pancreas	Pancrea
2	chr14:65638000-65646600	Weak transcription	Right Atrium	heart
3	chr14:65638200-65644400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65638200-65645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65638200-65646400	Weak transcription	A549	lung
6	chr14:65641200-65644400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:65641400-65646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:65641600-65644400	Weak transcription	GM12878-XiMat	blood
9	chr14:65641600-65644600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65641600-65646400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:65641600-65646400	Weak transcription	Fetal Intestine Small	intestine
12	chr14:65641600-65646400	Weak transcription	NH-A	brain
13	chr14:65641600-65646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:65641600-65646600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:65641600-65646600	Weak transcription	NHDF-Ad	bronchial
16	chr14:65641600-65646800	Weak transcription	Ovary	ovary
17	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65641800-65644600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:65641800-65646400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:65641800-65646600	Weak transcription	Brain Substantia Nigra	brain
23	chr14:65641800-65646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:65641800-65647000	Weak transcription	Brain Anterior Caudate	brain
25	chr14:65641800-65647400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:65641800-65650600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:65642000-65644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:65642000-65646600	Weak transcription	Brain Angular Gyrus	brain
30	chr14:65642000-65646600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:65642000-65646800	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:65642000-65647000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:65644200-65645200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:65644200-65645800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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