Variant report

Variant	rs8022029
Chromosome Location	chr14:65642209-65642210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65635954..65639205-chr14:65640166..65643842,3	MCF-7	breast:
2	chr14:65640216..65642886-chr14:65645703..65648052,2	MCF-7	breast:
3	chr14:65641252..65644123-chr14:65876327..65878727,2	MCF-7	breast:
4	chr14:65635781..65638807-chr14:65641309..65644199,4	MCF-7	breast:
5	chr14:65639777..65642769-chr14:65644370..65646796,2	K562	blood:
6	chr14:65637279..65639473-chr14:65641141..65644140,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131798	0.93[EUR][1000 genomes]
rs12889075	0.82[CEU][hapmap]
rs55650089	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57176753	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57341434	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57901560	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58501174	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60582452	0.96[ASN][1000 genomes]
rs61244338	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61607569	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160899	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs74056688	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74056690	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs74056693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056696	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020793	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8022029	FNTB	cis	lymphoblastoid	seeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65638000-65646600	Weak transcription	Pancreas	Pancrea
2	chr14:65638000-65646600	Weak transcription	Right Atrium	heart
3	chr14:65638200-65644400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65638200-65645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65638200-65646400	Weak transcription	A549	lung
6	chr14:65641200-65644400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:65641400-65644200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:65641400-65646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65641600-65644400	Weak transcription	GM12878-XiMat	blood
10	chr14:65641600-65644600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:65641600-65646400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:65641600-65646400	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65641600-65646400	Weak transcription	NH-A	brain
14	chr14:65641600-65646600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:65641600-65646600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:65641600-65646600	Weak transcription	NHDF-Ad	bronchial
17	chr14:65641600-65646800	Weak transcription	Ovary	ovary
18	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:65641800-65644200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:65641800-65644600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:65641800-65646400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:65641800-65646600	Weak transcription	Brain Substantia Nigra	brain
25	chr14:65641800-65646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:65641800-65647000	Weak transcription	Brain Anterior Caudate	brain
27	chr14:65641800-65647400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:65641800-65650600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:65642000-65644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:65642000-65646600	Weak transcription	Brain Angular Gyrus	brain
32	chr14:65642000-65646600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:65642000-65646800	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:65642000-65647000	Weak transcription	Brain Cingulate Gyrus	brain

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