Variant report

Variant	rs7160899
Chromosome Location	chr14:65649942-65649943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65649804..65652587-chr14:65878283..65880596,2	MCF-7	breast:
2	chr14:65649526..65652091-chr14:65652657..65655618,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131798	0.97[EUR][1000 genomes]
rs11622328	0.97[ASN][1000 genomes]
rs12889075	0.82[CEU][hapmap]
rs55650089	0.93[EUR][1000 genomes]
rs57176753	0.89[EUR][1000 genomes]
rs57341434	0.89[EUR][1000 genomes]
rs57901560	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58501174	0.89[EUR][1000 genomes]
rs58708909	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61244338	0.93[EUR][1000 genomes]
rs61607569	0.93[EUR][1000 genomes]
rs7154885	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs7155272	0.93[EUR][1000 genomes]
rs74056693	0.93[EUR][1000 genomes]
rs74056696	0.92[EUR][1000 genomes]
rs74056698	0.92[EUR][1000 genomes]
rs74056699	0.93[EUR][1000 genomes]
rs74056700	0.93[EUR][1000 genomes]
rs8020793	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022029	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	esv3368124	chr14:65649931-65650515	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65641600-65653400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:65641600-65653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65641600-65658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65641800-65650600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65641800-65653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:65647600-65650600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:65647600-65650800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:65647600-65651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:65647600-65651000	Weak transcription	Fetal Heart	heart
10	chr14:65647800-65650600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:65647800-65650600	Weak transcription	NH-A	brain
12	chr14:65647800-65650600	Weak transcription	NHEK	skin
13	chr14:65647800-65650600	Weak transcription	Osteobl	bone
14	chr14:65647800-65659800	Weak transcription	Fetal Intestine Large	intestine
15	chr14:65648200-65650000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:65648200-65652400	Weak transcription	Pancreas	Pancrea
17	chr14:65648400-65650000	ZNF genes & repeats	GM12878-XiMat	blood
18	chr14:65649600-65650600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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