Variant report

Variant	rs7154885
Chromosome Location	chr14:65641511-65641512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65635954..65639205-chr14:65640166..65643842,3	MCF-7	breast:
2	chr14:65640216..65642886-chr14:65645703..65648052,2	MCF-7	breast:
3	chr14:65641252..65644123-chr14:65876327..65878727,2	MCF-7	breast:
4	chr14:65635781..65638807-chr14:65641309..65644199,4	MCF-7	breast:
5	chr14:65639777..65642769-chr14:65644370..65646796,2	K562	blood:
6	chr14:65637279..65639473-chr14:65641141..65644140,2	K562	blood:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131798	0.90[EUR][1000 genomes]
rs12889075	0.82[CEU][hapmap]
rs55650089	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176753	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57341434	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57901560	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58501174	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60582452	1.00[ASN][1000 genomes]
rs61244338	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61607569	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160899	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs74056688	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74056690	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74056693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056696	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74056700	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8020793	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8022029	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65638000-65646600	Weak transcription	Pancreas	Pancrea
2	chr14:65638000-65646600	Weak transcription	Right Atrium	heart
3	chr14:65638200-65644400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65638200-65645800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65638200-65646400	Weak transcription	A549	lung
6	chr14:65640200-65641600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65640400-65641600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:65640400-65641600	Enhancers	Fetal Brain Male	brain
9	chr14:65640400-65641800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65640400-65641800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:65640400-65641800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:65640600-65641600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr14:65640600-65641600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:65640600-65641600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:65640600-65641600	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr14:65640600-65641600	Enhancers	Fetal Heart	heart
17	chr14:65640600-65641600	Enhancers	Ovary	ovary
18	chr14:65640600-65641600	Enhancers	GM12878-XiMat	blood
19	chr14:65640600-65641800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:65640800-65641600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr14:65640800-65641600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:65640800-65641600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:65640800-65641600	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr14:65640800-65641600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr14:65640800-65641600	Enhancers	NH-A	brain
26	chr14:65640800-65641600	Enhancers	NHDF-Ad	bronchial
27	chr14:65640800-65641800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr14:65640800-65641800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr14:65641000-65641600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:65641000-65641600	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr14:65641000-65641600	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr14:65641000-65641600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:65641000-65641600	Enhancers	Fetal Intestine Small	intestine
34	chr14:65641000-65641600	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr14:65641000-65641600	Enhancers	Left Ventricle	heart
36	chr14:65641000-65641600	Flanking Active TSS	HepG2	liver
37	chr14:65641000-65641800	Enhancers	Fetal Brain Female	brain
38	chr14:65641200-65641600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:65641200-65641600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:65641200-65641600	Enhancers	Right Ventricle	heart
41	chr14:65641200-65641800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr14:65641200-65641800	Enhancers	Brain Germinal Matrix	brain
43	chr14:65641200-65644400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr14:65641400-65641600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:65641400-65641600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr14:65641400-65641600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr14:65641400-65641600	Enhancers	Fetal Intestine Large	intestine
48	chr14:65641400-65642000	Enhancers	Brain Angular Gyrus	brain
49	chr14:65641400-65644200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:65641400-65646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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