Variant report
| Variant | rs57410763 |
|---|---|
| Chromosome Location | chr2:128583801-128583802 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:128567862..128571548-chr2:128582207..128585208,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136709 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10171898 | 0.86[ASN][1000 genomes] |
| rs10210695 | 0.86[ASN][1000 genomes] |
| rs11557685 | 0.86[ASN][1000 genomes] |
| rs11674513 | 0.86[ASN][1000 genomes] |
| rs11678032 | 0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11692524 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11693759 | 0.86[ASN][1000 genomes] |
| rs17418125 | 0.86[ASN][1000 genomes] |
| rs17534053 | 0.86[ASN][1000 genomes] |
| rs17534123 | 0.86[ASN][1000 genomes] |
| rs17599575 | 0.86[ASN][1000 genomes] |
| rs17600177 | 0.86[ASN][1000 genomes] |
| rs3771291 | 0.86[ASN][1000 genomes] |
| rs56954978 | 0.86[ASN][1000 genomes] |
| rs57498556 | 0.86[ASN][1000 genomes] |
| rs57913162 | 0.86[ASN][1000 genomes] |
| rs57986825 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs58080260 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs59090605 | 0.86[ASN][1000 genomes] |
| rs59727076 | 0.86[ASN][1000 genomes] |
| rs60087786 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61187878 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61730415 | 0.86[ASN][1000 genomes] |
| rs6714620 | 0.86[ASN][1000 genomes] |
| rs6734925 | 0.86[ASN][1000 genomes] |
| rs6756507 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72963794 | 0.86[ASN][1000 genomes] |
| rs7575961 | 0.86[ASN][1000 genomes] |
| rs7585200 | 0.86[ASN][1000 genomes] |
| rs7591477 | 0.86[ASN][1000 genomes] |
| rs7605158 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368061 | chr2:128375044-128672849 | Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs57410763 | WDR33 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:128576800-128586800 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 2 | chr2:128583200-128585800 | Weak transcription | Thymus | Thymus |
