Variant report
| Variant | rs6756507 |
|---|---|
| Chromosome Location | chr2:128572107-128572108 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:128566311..128569419-chr2:128571512..128573916,3 | K562 | blood: | |
| 2 | chr2:128567797..128570340-chr2:128570996..128572975,2 | MCF-7 | breast: | |
| 3 | chr2:128563734..128565741-chr2:128570190..128573693,3 | MCF-7 | breast: | |
| 4 | chr2:128462997..128465631-chr2:128571160..128572924,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| WDR33 | TF binding region |
| ENSG00000136709 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10171898 | 1.00[ASN][1000 genomes] |
| rs10210695 | 1.00[ASN][1000 genomes] |
| rs11557685 | 1.00[ASN][1000 genomes] |
| rs11674513 | 1.00[ASN][1000 genomes] |
| rs11678032 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11692524 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11693759 | 1.00[ASN][1000 genomes] |
| rs13397060 | 0.81[ASN][1000 genomes] |
| rs13421835 | 0.81[ASN][1000 genomes] |
| rs13423029 | 0.81[ASN][1000 genomes] |
| rs17418125 | 1.00[ASN][1000 genomes] |
| rs17534053 | 1.00[ASN][1000 genomes] |
| rs17534123 | 1.00[ASN][1000 genomes] |
| rs17599575 | 1.00[ASN][1000 genomes] |
| rs17600177 | 1.00[ASN][1000 genomes] |
| rs3771291 | 1.00[ASN][1000 genomes] |
| rs56954978 | 1.00[ASN][1000 genomes] |
| rs57410763 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57498556 | 1.00[ASN][1000 genomes] |
| rs57913162 | 1.00[ASN][1000 genomes] |
| rs57986825 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58080260 | 1.00[ASN][1000 genomes] |
| rs59009188 | 0.86[ASN][1000 genomes] |
| rs59090605 | 1.00[ASN][1000 genomes] |
| rs59727076 | 1.00[ASN][1000 genomes] |
| rs59918187 | 0.81[ASN][1000 genomes] |
| rs60087786 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61187878 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61730415 | 1.00[ASN][1000 genomes] |
| rs6714620 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6734925 | 1.00[ASN][1000 genomes] |
| rs72963794 | 1.00[ASN][1000 genomes] |
| rs7560482 | 0.81[ASN][1000 genomes] |
| rs7574303 | 0.81[ASN][1000 genomes] |
| rs7575961 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7585200 | 1.00[ASN][1000 genomes] |
| rs7591477 | 1.00[ASN][1000 genomes] |
| rs7605158 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368061 | chr2:128375044-128672849 | Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6756507 | WDR33 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:128571600-128572800 | Enhancers | Liver | Liver |
| 2 | chr2:128572000-128573200 | Enhancers | HepG2 | liver |
