Variant report

Variant	rs59727076
Chromosome Location	chr2:128531384-128531385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128527963..128531456-chr2:128532703..128535317,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10171898	1.00[ASN][1000 genomes]
rs10210695	1.00[ASN][1000 genomes]
rs11557685	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674513	1.00[ASN][1000 genomes]
rs11678032	1.00[ASN][1000 genomes]
rs11692524	1.00[ASN][1000 genomes]
rs11693759	1.00[ASN][1000 genomes]
rs13397060	0.81[ASN][1000 genomes]
rs13421835	0.81[ASN][1000 genomes]
rs13423029	0.81[ASN][1000 genomes]
rs17418125	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534053	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534123	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17599575	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600177	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771291	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954978	1.00[ASN][1000 genomes]
rs57410763	0.86[ASN][1000 genomes]
rs57498556	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913162	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57986825	1.00[ASN][1000 genomes]
rs58080260	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59009188	0.86[ASN][1000 genomes]
rs59090605	1.00[ASN][1000 genomes]
rs59918187	0.81[ASN][1000 genomes]
rs60087786	1.00[ASN][1000 genomes]
rs61187878	1.00[ASN][1000 genomes]
rs61730415	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714620	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734925	1.00[ASN][1000 genomes]
rs6756507	1.00[ASN][1000 genomes]
rs72963794	1.00[ASN][1000 genomes]
rs7560482	0.81[ASN][1000 genomes]
rs7574303	0.81[ASN][1000 genomes]
rs7575961	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585200	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591477	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605158	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368061	chr2:128375044-128672849	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv428726	chr2:128387756-128539894	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59727076	WDR33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128479400-128560400	Weak transcription	Esophagus	oesophagus
2	chr2:128498200-128562800	Weak transcription	Pancreas	Pancrea
3	chr2:128498400-128533800	Weak transcription	Right Ventricle	heart
4	chr2:128507600-128542800	Weak transcription	Stomach Mucosa	stomach
5	chr2:128519200-128543400	Weak transcription	Fetal Stomach	stomach
6	chr2:128521200-128533800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:128522000-128534600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:128522000-128549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:128522600-128543600	Weak transcription	Gastric	stomach
10	chr2:128522600-128543800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:128522600-128565000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:128522600-128567400	Weak transcription	Aorta	Aorta
13	chr2:128522800-128533600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:128522800-128533600	Weak transcription	Ovary	ovary
15	chr2:128522800-128539400	Weak transcription	HSMMtube	muscle
16	chr2:128522800-128543600	Weak transcription	Lung	lung
17	chr2:128522800-128546000	Weak transcription	Fetal Brain Male	brain
18	chr2:128522800-128564200	Weak transcription	Small Intestine	intestine
19	chr2:128523000-128533600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:128523000-128533600	Weak transcription	Brain Substantia Nigra	brain
21	chr2:128523000-128533600	Weak transcription	Fetal Heart	heart
22	chr2:128523000-128533600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:128523000-128534600	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:128523400-128545200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr2:128524800-128538200	Weak transcription	Fetal Intestine Small	intestine
26	chr2:128525800-128542800	Weak transcription	Fetal Brain Female	brain
27	chr2:128525800-128545800	Weak transcription	Brain Germinal Matrix	brain
28	chr2:128526000-128532800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:128526000-128533800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:128526000-128533800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr2:128526000-128534800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:128526000-128540600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr2:128526000-128553200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:128527400-128533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr2:128527400-128533800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:128527600-128533800	Weak transcription	Psoas Muscle	Psoas
37	chr2:128527600-128533800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:128527600-128563000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:128527800-128533400	Weak transcription	Brain Anterior Caudate	brain
40	chr2:128527800-128534000	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:128527800-128564200	Weak transcription	Fetal Lung	lung
42	chr2:128528000-128531600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:128528000-128533000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr2:128528000-128533800	Weak transcription	Liver	Liver
45	chr2:128528000-128567000	Weak transcription	Placenta	Placenta
46	chr2:128528200-128554400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr2:128528600-128543600	Weak transcription	Fetal Muscle Leg	muscle
48	chr2:128528600-128548800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr2:128528800-128531400	Enhancers	A549	lung
50	chr2:128528800-128533800	Weak transcription	H1 Cell Line	embryonic stem cell

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