Variant report

Variant	rs7575961
Chromosome Location	chr2:128565941-128565942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128553056..128555122-chr2:128565686..128567532,2	K562	blood:
2	chr2:128553189..128555100-chr2:128565849..128567949,2	K562	blood:
3	chr2:128562171..128564719-chr2:128565453..128568467,4	MCF-7	breast:
4	chr2:128555142..128559224-chr2:128564201..128571074,7	MCF-7	breast:
5	chr2:128558734..128560690-chr2:128565801..128567358,2	MCF-7	breast:
6	chr2:128559250..128561344-chr2:128564178..128566088,2	K562	blood:
7	chr2:128565293..128570506-chr2:128613881..128617578,7	K562	blood:
8	chr2:128563392..128566470-chr2:128566584..128569999,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136709	Chromatin interaction
ENSG00000201470	Chromatin interaction
ENSG00000144231	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10171898	1.00[ASN][1000 genomes]
rs10210695	1.00[ASN][1000 genomes]
rs11557685	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674513	1.00[ASN][1000 genomes]
rs11678032	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11682274	1.00[CEU][hapmap]
rs11692524	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11693759	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13397060	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13421835	0.81[ASN][1000 genomes]
rs13423029	0.81[ASN][1000 genomes]
rs17418125	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534053	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534123	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17599575	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17600177	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771291	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954978	1.00[ASN][1000 genomes]
rs57410763	0.86[ASN][1000 genomes]
rs57498556	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913162	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57986825	1.00[ASN][1000 genomes]
rs58080260	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59009188	0.86[ASN][1000 genomes]
rs59090605	1.00[ASN][1000 genomes]
rs59727076	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59918187	0.81[ASN][1000 genomes]
rs60087786	1.00[ASN][1000 genomes]
rs61187878	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61730415	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714620	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734925	1.00[ASN][1000 genomes]
rs6756507	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963794	1.00[ASN][1000 genomes]
rs7560482	0.81[ASN][1000 genomes]
rs7574303	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7585200	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591477	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605158	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368061	chr2:128375044-128672849	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7575961	WDR33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128522600-128567400	Weak transcription	Aorta	Aorta
2	chr2:128528000-128567000	Weak transcription	Placenta	Placenta
3	chr2:128529400-128567200	Weak transcription	NHDF-Ad	bronchial
4	chr2:128534800-128566800	Weak transcription	Brain Substantia Nigra	brain
5	chr2:128534800-128567200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:128535400-128567200	Weak transcription	Fetal Kidney	kidney
7	chr2:128544200-128567000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:128547400-128567200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:128548400-128567800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:128549200-128567200	Weak transcription	Brain Angular Gyrus	brain
11	chr2:128549200-128567800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:128549400-128567400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:128553000-128567400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:128553600-128567200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:128554000-128567200	Weak transcription	Osteobl	bone
16	chr2:128554800-128566800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:128555600-128567200	Weak transcription	Brain Germinal Matrix	brain
18	chr2:128558000-128567400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:128558800-128567200	Weak transcription	Spleen	Spleen
20	chr2:128559000-128567000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:128559000-128567400	Weak transcription	Colonic Mucosa	Colon
22	chr2:128559400-128567200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:128559400-128567200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:128559600-128567200	Weak transcription	Fetal Stomach	stomach
25	chr2:128560200-128567200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:128560200-128567200	Enhancers	Liver	Liver
27	chr2:128560400-128566000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr2:128561000-128567200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr2:128562000-128567000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:128562000-128567400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr2:128562200-128566800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr2:128562600-128567200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr2:128562800-128567400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:128562800-128567400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:128563000-128566200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr2:128563200-128567200	Enhancers	Brain Anterior Caudate	brain
37	chr2:128563200-128567200	Enhancers	Duodenum Mucosa	Duodenum
38	chr2:128563400-128566800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr2:128563400-128567200	Weak transcription	Right Atrium	heart
40	chr2:128563400-128567200	Weak transcription	HSMM	muscle
41	chr2:128563400-128567800	Weak transcription	Pancreas	Pancrea
42	chr2:128563600-128566200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr2:128563600-128566800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:128563600-128567200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:128563600-128567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr2:128563800-128566000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr2:128563800-128567200	Enhancers	Fetal Intestine Large	intestine
48	chr2:128564000-128566200	Enhancers	Adipose Nuclei	Adipose
49	chr2:128564000-128567200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:128564200-128566000	Enhancers	Fetal Lung	lung

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