Variant report

Variant	rs61187878
Chromosome Location	chr2:128571969-128571970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128566311..128569419-chr2:128571512..128573916,3	K562	blood:
2	chr2:128567797..128570340-chr2:128570996..128572975,2	MCF-7	breast:
3	chr2:128563734..128565741-chr2:128570190..128573693,3	MCF-7	breast:
4	chr2:128462997..128465631-chr2:128571160..128572924,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136709	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10171898	1.00[ASN][1000 genomes]
rs10210695	1.00[ASN][1000 genomes]
rs11557685	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674513	1.00[ASN][1000 genomes]
rs11678032	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682274	0.85[EUR][1000 genomes]
rs11692524	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693759	1.00[ASN][1000 genomes]
rs13397060	0.81[ASN][1000 genomes]
rs13421835	0.81[ASN][1000 genomes]
rs13423029	0.81[ASN][1000 genomes]
rs17418125	1.00[ASN][1000 genomes]
rs17534053	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534123	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17599575	1.00[ASN][1000 genomes]
rs17600177	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771291	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954978	1.00[ASN][1000 genomes]
rs57410763	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57498556	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913162	1.00[ASN][1000 genomes]
rs57986825	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58080260	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59009188	0.86[ASN][1000 genomes]
rs59090605	1.00[ASN][1000 genomes]
rs59727076	1.00[ASN][1000 genomes]
rs59918187	0.81[ASN][1000 genomes]
rs60087786	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61730415	1.00[ASN][1000 genomes]
rs6714620	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734925	1.00[ASN][1000 genomes]
rs6756507	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963794	1.00[ASN][1000 genomes]
rs7560482	0.81[ASN][1000 genomes]
rs7574303	0.81[ASN][1000 genomes]
rs7575961	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585200	1.00[ASN][1000 genomes]
rs7591477	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605158	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368061	chr2:128375044-128672849	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61187878	WDR33	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128570000-128572000	Weak transcription	HepG2	liver
2	chr2:128571600-128572800	Enhancers	Liver	Liver

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