Variant report

Variant	rs57447090
Chromosome Location	chr11:105854638-105854639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105847874..105851382-chr11:105852371..105858988,6	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1627890	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2212469	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2846216	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518744	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs555583	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59419014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59432771	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594592	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59510591	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs609507	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61736488	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61751525	1.00[ASN][1000 genomes]
rs627918	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs648762	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66632571	0.81[AFR][1000 genomes]
rs66698959	0.83[AFR][1000 genomes]
rs7125799	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129398	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73542812	0.93[ASN][1000 genomes]
rs73542813	0.82[ASN][1000 genomes]
rs73542814	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73542888	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73544604	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73544605	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73544608	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73544612	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73544617	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73550981	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552647	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552687	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552693	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105854400-105854800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:105854600-105865000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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