Variant report

Variant	rs627918
Chromosome Location	chr11:105786640-105786641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1627890	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212469	1.00[ASN][1000 genomes]
rs2846216	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs518744	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555583	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57447090	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59419014	1.00[ASN][1000 genomes]
rs59432771	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594592	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59510591	0.87[ASN][1000 genomes]
rs609507	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736488	1.00[ASN][1000 genomes]
rs61751525	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648762	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675091	0.81[AFR][1000 genomes]
rs7125799	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7129398	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542812	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542813	0.82[ASN][1000 genomes]
rs73542814	0.93[ASN][1000 genomes]
rs73542888	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544604	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544605	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544608	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544612	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544617	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550981	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552647	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73552687	1.00[ASN][1000 genomes]
rs73552693	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105780400-105791400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105786000-105793800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105786200-105787000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:105786200-105788600	Weak transcription	Fetal Lung	lung
5	chr11:105786400-105793800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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