Variant report

Variant	rs73542814
Chromosome Location	chr11:105761245-105761246
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1627890	0.93[ASN][1000 genomes]
rs2212469	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2846216	0.93[ASN][1000 genomes]
rs4633434	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs515803	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs518744	0.93[ASN][1000 genomes]
rs555583	0.93[ASN][1000 genomes]
rs57447090	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59419014	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59432771	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59510591	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs609507	0.93[ASN][1000 genomes]
rs61736488	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61751525	0.93[ASN][1000 genomes]
rs627918	0.93[ASN][1000 genomes]
rs648762	0.93[ASN][1000 genomes]
rs7125799	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7129398	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73540999	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73542812	1.00[ASN][1000 genomes]
rs73542813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73542888	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73544604	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73544605	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73544608	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73544612	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73544617	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73550981	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73552647	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73552687	0.93[ASN][1000 genomes]
rs73552693	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105760800-105763400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:105760800-105764000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:105760800-105764400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:105761000-105762400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:105761200-105762400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:105761200-105763600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links