Variant report

Variant	rs73544617
Chromosome Location	chr11:105796756-105796757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1627890	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212469	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2846216	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs518744	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555583	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57447090	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59419014	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59432771	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594592	0.82[ASN][1000 genomes]
rs59510591	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs609507	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61736488	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61751525	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627918	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66698959	0.80[AFR][1000 genomes]
rs7125799	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7129398	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542812	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542813	0.82[ASN][1000 genomes]
rs73542814	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73542888	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544604	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544605	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544608	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552647	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73552687	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73552693	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105792400-105797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105794600-105797200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:105795000-105804600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:105795200-105800200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:105795200-105806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:105795400-105800000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:105795400-105805600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:105795600-105800000	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:105795600-105805600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:105795800-105797600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:105796200-105800400	Weak transcription	Fetal Lung	lung
12	chr11:105796400-105797200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:105796600-105798000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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