Variant report

Variant	rs609507
Chromosome Location	chr11:105772681-105772682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1627890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212469	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2846216	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs515803	1.00[JPT][hapmap]
rs518744	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555583	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57447090	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59419014	1.00[ASN][1000 genomes]
rs59432771	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs594592	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs59510591	0.87[ASN][1000 genomes]
rs61736488	1.00[ASN][1000 genomes]
rs61751525	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs627918	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648762	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675091	0.81[AFR][1000 genomes]
rs7125799	1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7129398	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542812	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73542813	0.82[ASN][1000 genomes]
rs73542814	0.93[ASN][1000 genomes]
rs73542888	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544604	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544605	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544608	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544612	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544617	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550981	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552647	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73552687	1.00[ASN][1000 genomes]
rs73552693	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105768800-105777000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105770800-105774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105771200-105777000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:105771400-105774000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:105771400-105778000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:105771400-105785600	Weak transcription	Brain Angular Gyrus	brain

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