Variant report

Variant	rs675091
Chromosome Location	chr11:105853107-105853108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105847874..105851382-chr11:105852371..105858988,6	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1258586	0.80[ASN][1000 genomes]
rs1627890	0.81[AFR][1000 genomes]
rs17104765	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17104807	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17391232	0.82[JPT][hapmap]
rs17391295	0.82[JPT][hapmap]
rs17391463	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1938910	0.82[JPT][hapmap]
rs1938913	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2508467	0.85[JPT][hapmap]
rs2509482	0.85[JPT][hapmap]
rs2846216	0.85[AFR][1000 genomes]
rs3737334	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs3819079	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs474158	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs502453	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs518639	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs518744	0.81[AFR][1000 genomes]
rs535532	0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538271	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs539153	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs552767	0.85[JPT][hapmap]
rs555583	0.85[AFR][1000 genomes]
rs585464	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs589904	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs594592	0.83[AFR][1000 genomes]
rs602098	0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs609507	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs611352	0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs617950	0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs627918	0.81[AFR][1000 genomes]
rs648762	0.81[AFR][1000 genomes]
rs652286	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66632571	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66698959	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674307	0.85[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679914	0.85[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs7116745	0.85[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:105848200-105880400	Weak transcription	Fetal Brain Male	brain
3	chr11:105849800-105866600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:105851400-105854400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:105851400-105862600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:105851400-105864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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