Variant report

Variant	rs502453
Chromosome Location	chr11:105815878-105815879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105812592..105814172-chr11:105814503..105816529,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12099201	1.00[CHB][hapmap]
rs12573988	0.86[CHB][hapmap]
rs12574754	0.88[CHB][hapmap]
rs12577871	0.88[CHB][hapmap]
rs1258586	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17104703	0.88[CHB][hapmap]
rs17104711	0.86[CHB][hapmap]
rs17104765	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17104807	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17104830	1.00[CHB][hapmap]
rs17391232	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17391295	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs17391463	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1938910	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1938912	0.88[CHB][hapmap]
rs1938913	0.85[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508467	0.85[JPT][hapmap]
rs2509482	0.85[JPT][hapmap]
rs2898230	0.88[CHB][hapmap]
rs3737334	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3758795	0.88[CHB][hapmap]
rs3819079	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs474158	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4754137	0.88[CHB][hapmap]
rs4755119	0.88[CHB][hapmap]
rs4755121	0.88[CHB][hapmap]
rs518639	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs535532	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538271	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs539153	0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs552767	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap]
rs585464	0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs589904	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs602098	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs609239	0.88[CHB][hapmap]
rs611352	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs617950	0.94[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs652286	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66632571	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66698959	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs674307	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs675091	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs679914	0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7116745	0.85[JPT][hapmap]
rs7945345	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr11:105811000-105816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:105813000-105817200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:105813800-105817000	Weak transcription	Brain Angular Gyrus	brain
7	chr11:105814000-105818600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:105814000-105818600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:105814200-105818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:105814200-105818000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:105814200-105818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:105815400-105819000	Enhancers	Brain Hippocampus Middle	brain
13	chr11:105815800-105816000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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