Variant report

Variant	rs538271
Chromosome Location	chr11:105775493-105775494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12573988	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1258586	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104703	0.80[AMR][1000 genomes]
rs17104711	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1938908	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1938913	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938914	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1940965	0.82[AMR][1000 genomes]
rs2155019	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2155021	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2409608	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2508467	0.91[ASN][1000 genomes]
rs2509482	0.91[ASN][1000 genomes]
rs2898229	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs41302411	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4754137	0.80[AMR][1000 genomes]
rs4754138	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4755119	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs502453	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs518639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535532	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539153	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs585464	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs589904	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609239	0.80[ASN][1000 genomes]
rs611352	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617950	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs652286	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66632571	0.87[ASN][1000 genomes]
rs66698959	0.87[ASN][1000 genomes]
rs674307	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675091	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679914	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72976031	0.82[AMR][1000 genomes]
rs72976037	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72978094	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72978096	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105768800-105777000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105771200-105777000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105771400-105778000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:105771400-105785600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:105774200-105784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:105774200-105785600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:105774600-105777800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:105775200-105776000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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