Variant report

Variant	rs2508467
Chromosome Location	chr11:105758104-105758105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12573988	0.85[JPT][hapmap]
rs12574754	0.85[JPT][hapmap]
rs12575492	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12577871	0.85[JPT][hapmap]
rs1258586	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17104703	0.85[JPT][hapmap]
rs17104711	0.85[JPT][hapmap]
rs17104747	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1938912	0.85[JPT][hapmap]
rs1938913	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1939154	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2226578	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2277279	0.85[JPT][hapmap]
rs2277280	0.80[CHB][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap]
rs2509482	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898230	0.82[JPT][hapmap]
rs3758795	0.85[JPT][hapmap]
rs4754137	0.85[JPT][hapmap]
rs4755118	0.85[JPT][hapmap]
rs4755119	0.85[JPT][hapmap]
rs502453	0.85[JPT][hapmap]
rs518639	0.89[ASN][1000 genomes]
rs535532	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs538271	0.91[ASN][1000 genomes]
rs539153	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs552767	1.00[JPT][hapmap]
rs585464	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs589904	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs602098	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs609239	0.85[JPT][hapmap]
rs611352	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs617950	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs652286	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs674307	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs679914	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7116745	0.80[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs7945345	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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