Variant report

Variant	rs17104747
Chromosome Location	chr11:105805106-105805107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12099201	0.90[ASN][1000 genomes]
rs12573988	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574754	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12575492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577871	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104703	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104711	0.90[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104765	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104807	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104830	0.90[ASN][1000 genomes]
rs17391232	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17391295	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17391463	0.91[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938908	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1938910	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938912	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938913	0.85[JPT][hapmap]
rs1938914	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1939154	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1940965	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155021	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2226578	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2277279	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs2277280	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2409608	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2508467	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2509482	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2898229	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2898230	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737334	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs3758795	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819079	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs41302411	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs474158	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs4754137	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4754138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755118	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755119	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755121	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535532	0.89[CHB][hapmap]
rs539153	0.85[JPT][hapmap]
rs552767	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs585464	0.85[JPT][hapmap]
rs589904	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs602098	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs609239	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs611352	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs617950	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs674307	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs679914	0.85[JPT][hapmap]
rs7116745	0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs72976031	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72976037	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72978094	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72978096	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72979239	0.90[ASN][1000 genomes]
rs72979255	0.90[ASN][1000 genomes]
rs72979258	0.88[ASN][1000 genomes]
rs72979261	0.88[ASN][1000 genomes]
rs72979267	0.88[ASN][1000 genomes]
rs72979289	0.88[ASN][1000 genomes]
rs72979291	0.88[ASN][1000 genomes]
rs72979297	0.88[ASN][1000 genomes]
rs72979301	0.88[ASN][1000 genomes]
rs72981211	0.83[ASN][1000 genomes]
rs72981917	0.90[ASN][1000 genomes]
rs72981928	0.90[ASN][1000 genomes]
rs72981935	0.90[ASN][1000 genomes]
rs72981936	0.90[ASN][1000 genomes]
rs72981944	0.90[ASN][1000 genomes]
rs7933212	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7945345	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105795200-105806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105795400-105805600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105795600-105805600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:105797200-105806400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:105799400-105810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:105800600-105805600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105801000-105805400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:105801000-105805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:105801000-105806400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:105801000-105806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:105801000-105806400	Weak transcription	Hela-S3	cervix
12	chr11:105801200-105805200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:105801200-105805200	Weak transcription	Fetal Lung	lung
14	chr11:105801200-105806200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:105801600-105807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:105804400-105805400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:105804600-105807800	Enhancers	Brain Cingulate Gyrus	brain

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