Variant report

Variant	rs3819079
Chromosome Location	chr11:105844765-105844766
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs12099201	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573988	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs12574754	0.88[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12575492	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12577871	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104703	0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17104711	0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs17104747	0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17104765	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391232	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391295	0.88[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[ASN][1000 genomes]
rs17391463	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[ASN][1000 genomes]
rs1938908	0.86[ASN][1000 genomes]
rs1938910	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1938912	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1938914	0.86[ASN][1000 genomes]
rs1939154	0.82[JPT][hapmap]
rs1940965	0.83[ASN][1000 genomes]
rs2155019	0.86[ASN][1000 genomes]
rs2155021	0.86[ASN][1000 genomes]
rs2226578	0.82[JPT][hapmap]
rs2277279	0.87[CHD][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap]
rs2277280	0.80[CHD][hapmap];0.82[JPT][hapmap]
rs2409608	0.86[ASN][1000 genomes]
rs2898229	0.86[ASN][1000 genomes]
rs2898230	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs3737334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758795	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs41302411	0.86[ASN][1000 genomes]
rs474158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754137	0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4754138	0.86[ASN][1000 genomes]
rs4755118	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4755119	0.88[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4755120	0.90[ASN][1000 genomes]
rs4755121	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs502453	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs535532	0.88[CHB][hapmap]
rs552767	0.88[CHB][hapmap]
rs562546	0.82[JPT][hapmap]
rs589904	0.88[CHB][hapmap]
rs602098	0.88[CHB][hapmap]
rs609239	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.86[ASN][1000 genomes]
rs611352	0.88[CHB][hapmap]
rs617950	0.88[CHB][hapmap]
rs674307	0.88[CHB][hapmap]
rs7116745	0.80[CHD][hapmap]
rs72645426	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72976031	0.83[ASN][1000 genomes]
rs72976037	0.86[ASN][1000 genomes]
rs72978094	0.86[ASN][1000 genomes]
rs72978096	0.86[ASN][1000 genomes]
rs72979239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979267	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981211	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72981917	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945345	0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105839400-105845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105843000-105850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:105843800-105866400	Weak transcription	Brain Angular Gyrus	brain

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