Variant report

Variant	rs12099201
Chromosome Location	chr11:105820109-105820110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12573988	0.86[ASN][1000 genomes]
rs12574754	0.85[ASN][1000 genomes]
rs12575492	0.90[ASN][1000 genomes]
rs12577871	0.90[ASN][1000 genomes]
rs17104703	0.83[ASN][1000 genomes]
rs17104711	0.86[ASN][1000 genomes]
rs17104747	0.90[ASN][1000 genomes]
rs17104765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104807	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391295	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17391463	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1938908	0.86[ASN][1000 genomes]
rs1938910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1938912	0.90[ASN][1000 genomes]
rs1938914	0.86[ASN][1000 genomes]
rs1940965	0.83[ASN][1000 genomes]
rs2155019	0.86[ASN][1000 genomes]
rs2155021	0.86[ASN][1000 genomes]
rs2409608	0.86[ASN][1000 genomes]
rs2898229	0.86[ASN][1000 genomes]
rs2898230	0.90[ASN][1000 genomes]
rs3737334	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758795	0.90[ASN][1000 genomes]
rs3819079	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41302411	0.86[ASN][1000 genomes]
rs474158	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754137	0.83[ASN][1000 genomes]
rs4754138	0.86[ASN][1000 genomes]
rs4755118	0.82[ASN][1000 genomes]
rs4755119	0.86[ASN][1000 genomes]
rs4755120	0.90[ASN][1000 genomes]
rs4755121	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs502453	1.00[CHB][hapmap]
rs562546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs609239	0.86[ASN][1000 genomes]
rs72645426	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72976031	0.83[ASN][1000 genomes]
rs72976037	0.86[ASN][1000 genomes]
rs72978094	0.86[ASN][1000 genomes]
rs72978096	0.86[ASN][1000 genomes]
rs72979239	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979255	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979258	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979261	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979267	0.98[ASN][1000 genomes]
rs72979289	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979291	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979297	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72979301	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72981211	0.93[ASN][1000 genomes]
rs72981917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981928	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981935	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981936	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72981944	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945345	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346101	chr11:105819810-105820164	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105818800-105826600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105819400-105820600	Enhancers	Hela-S3	cervix

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