Variant report

Variant	rs4755118
Chromosome Location	chr11:105742685-105742686
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12099201	0.82[ASN][1000 genomes]
rs12573988	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574754	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12575492	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12577871	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104703	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17104711	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17104747	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104765	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17104807	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17104830	0.82[ASN][1000 genomes]
rs17391232	0.91[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17391295	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17391463	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1938908	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1938910	0.91[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1938912	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1938913	0.85[JPT][hapmap]
rs1938914	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1939154	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1940965	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155021	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2226578	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2277279	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2277280	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2409608	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508467	0.85[JPT][hapmap]
rs2509482	0.85[JPT][hapmap]
rs2898229	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898230	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3737334	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs3758795	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3819079	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs41302411	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs474158	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4754137	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4754138	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755119	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755120	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755121	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs535532	0.88[CHB][hapmap]
rs539153	0.85[JPT][hapmap]
rs552767	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs585464	0.85[JPT][hapmap]
rs589904	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs602098	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs609239	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs611352	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs674307	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs679914	0.85[JPT][hapmap]
rs7116745	0.89[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs72976031	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72976037	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72978094	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72978096	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72979239	0.82[ASN][1000 genomes]
rs72979255	0.82[ASN][1000 genomes]
rs72979258	0.80[ASN][1000 genomes]
rs72979261	0.80[ASN][1000 genomes]
rs72979267	0.80[ASN][1000 genomes]
rs72979289	0.80[ASN][1000 genomes]
rs72979291	0.80[ASN][1000 genomes]
rs72979297	0.80[ASN][1000 genomes]
rs72979301	0.80[ASN][1000 genomes]
rs72981917	0.82[ASN][1000 genomes]
rs72981928	0.82[ASN][1000 genomes]
rs72981935	0.82[ASN][1000 genomes]
rs72981936	0.82[ASN][1000 genomes]
rs72981944	0.82[ASN][1000 genomes]
rs7933212	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7945345	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105738200-105745400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:105738400-105744200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:105740600-105744600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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